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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|2657802|2663288|+|5|circRNA|FAM193A|ENST00000545951.5|6,7,8,9,10 | circFAM193A(6,7,8,9,10) | FAM193A | LMMKKRTARVVGSPQGPRRKMECWEAGAPGQRRAKQTVHPHPTQHSR | KMECWEAGAPGQR | No | Alternative | Alternative | 13 | 2 | CTG | TGA | TransCirc | No |
chr4|2693585|2695142|+|2|circRNA|FAM193A|NR_046336|14,15 | circFAM193A(14,15) | FAM193A | LTAKGTAARMVSTTHSRMMGTRVQMRTAALSTAPAPRPPPTRRRASTATAATANSLGTAG | GTAARMVSTTHSR | No | Alternative | Alternative | 13 | 3 | CTG | TGA | TransCirc | No |
chr4|2693585|2695142|+|2|circRNA|FAM193A|NR_046336|14,15 | circFAM193A(14,15) | FAM193A | LTAKGTAARMVSTTHSRMMGTRVQMRTAALSTAPAPRPPPTRRRASTATAATANSLGTAG | MVSTTHSRMMGTR | No | Alternative | Alternative | 13 | 3 | CTG | TGA | TransCirc | No |
chr4|2824730|2824858|+|1|ciRNA|SH3BP2|ENST00000452765.6|4 | ciSH3BP2(4) | SH3BP2 | LQAPGWTCLGGSLVLGRWPLSPGQREGVTGGPRTSAR | EGVTGGPRTSAR | No | Junction | Junction | 12 | 3 | CTG | TGA | NA | No |
chr4|3086938|3122936|+|9|circRNA|HTT|NM_002111|2,3,4,5,6,7,8,9,10 | circHTT(2,3,4,5,6,7,8,9,10) | HTT | LEGVPHAALSFQENKKKERTFSYQERPCESLSDNM | LEGVPHAALSFQENKK | No | Alternative | Junction | 16 | 1 | CTG | TGA | TransCirc | No |
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