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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|1814604|1815663|-|1|ciRNA|LETM1|ENST00000302787.2|13 | ciLETM1(13) | LETM1 | LREKTHLVATHVPGPRPQLVALGSRGGAANTSQGPPTLRGDCTGSLGALHTCRGPPKLRGNYTGEPRGSLGTAPRLRGDCWAELPSAATQVPG | GNYTGEPRGSLGTAPR | No | Alternative | Alternative | 16 | 1 | TTG | TAG | NA | No |
chr4|1814604|1815663|-|1|ciRNA|LETM1|ENST00000302787.2|13 | ciLETM1(13) | LETM1 | LREKTHLVATHVPGPRPQLVALGSRGGAANTSQGPPTLRGDCTGSLGALHTCRGPPKLRGNYTGEPRGSLGTAPRLRGDCWAELPSAATQVPG | GSLGTAPR | No | Alternative | Alternative | 8 | 1 | TTG | TAG | NA | No |
chr4|182600923|182628889|+|2|circRNA|TENM3|ENST00000511685.5|4,5 | circTENM3(4,5) | TENM3 | LEMHCTVCRRGLGAPGNTPVLFYRATCKQSRPVYPAALAAFP | GLGAPGNTPVLFYRATCK | No | Junction | Junction | 18 | 1 | CTG | TAA | TransCirc | No |
chr4|182600923|182688351|+|9|circRNA|TENM3|ENST00000511685.5|4,5,6,7,8,9,10,11,12 | circTENM3(4,5,6,7,8,9,10,11,12) | TENM3 | LWTVAHTAFAWGGRVAVKKAGRAQPVIREPATPAVPSTGPARMASVNAARAGMESTALSSNLQAIKASLPCSPCRLPISSTLHSIIHPSLLSTETP | EPATPAVPSTGPARMASVNAAR | No | Alternative | Junction | 22 | 1 | CTG | TGA | TransCirc | No |
chr4|1832743|1841797|-|4|circRNA|LETM1|ENST00000302787.2|6,5,4,3 | circLETM1(6,5,4,3) | LETM1 | MRFSKLFEDELTLDNLTRPQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKECSIWLLHSHPPCVHILQRRSPRLLGSEARVPSHSVESAMDLYLCGFCGCGTSVPSCAWLALFAPCSR | LLGSEAR | No | Alternative | Junction | 7 | 1 | ATG | TGA | TransCirc | No |
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