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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|168668189|168711923|+|8|circRNA|PALLD|ENST00000261509.10|3,4,5,6,7,8,9,10 | circPALLD(3,4,5,6,7,8,9,10) | PALLD | LSCFHPLRSHHLCLPNQNYGSVKGKNCTTLLIFKSTVREGTSIP | GKNCTTLLIFK | No | Alternative | Junction | 11 | 1 | CTG | TGA | riboCIRC,TransCirc | No |
chr4|169136317|169136620|-|1|circRNA|SH3RF1|NM_020870|5 | circSH3RF1(5) | SH3RF1 | LCQELMLENVPRQQPRAALPQSTPTPRRTPKSGTPSLPSLWPTSPPRHPRTATPWRSAPLSSSAPATPLLLHGSASCLGSPAVPLLSLTRLLSS | AALPQSTPTPR | No | Alternative | Junction | 11 | 2 | CTG | TGA | TransCirc | No |
chr4|169555931|169561554|-|2|circRNA|NEK1|NM_001199397|17,16 | circNEK1(17,16) | NEK1 | MNITMPFLTKCSNKEQKIMKLNGKEKYMVEVFQKVGKNK | MNITMPFLTK | No | Alternative | Junction | 10 | 2 | ATG | TAG | TransCirc | No |
chr4|169555931|169590809|-|12|circRNA|NEK1|NM_001199397|17,16,15,14,13,12,11,10,9,8,7,6 | circNEK1(17,16,15,14,13,12,11,10,9,8,7,6) | NEK1 | LGSGGTIAPSSFSSRGQYEHYHAIFDQMQQQRAEDNEAKWKREIYGRGLPERFWTGLYRYVWP | GLPERFWTGLYR | No | Junction | Junction | 12 | 1 | CTG | TGA | TransCirc | No |
chr4|169585348|169599197|-|6|circRNA|NEK1|NM_001199397|10,9,8,7,6,5 | circNEK1(10,9,8,7,6,5) | NEK1 | MKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKRIEKFLSPQKMALST | IEKFLSPQK | No | Alternative | Junction | 9 | 1 | ATG | TAG | TransCirc | No |
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