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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|152273704|152315338|-|4|circRNA|KMT2C|ENST00000262189.10|7,6,5,4 | circKMT2C(7,6,5,4) | KMT2C | MYHYPCAAGAGTFQDFSHIFLLCPEHIDQAPERLNSSALFVTVGKKVP | LNSSALFVTVGKK | No | Junction | Junction | 13 | 1 | ATG | TAG | TransCirc | No |
chr7|152864884|152866317|+|1|circRNA|Unknown|T336287|4 | circUnknown(4) | Unknown | LAQSLGASHCTSRPDLRVGATAPPDQTSESGPLHLQTRSQSRGHCTSRPDLRIGATAPPDQIAESGPPHLQTRPQGWGHRTSRPDHRVGATAPPDQTAGSGPPHLQTRTQSRCYRRVRATASPDQIAESGSHRMGLPMKRCLQMGHLWRDLCKWTVFSEREKLVSKKDFFVLLWNILLWTKEK | ATASPDQIAESGSHR | No | Alternative | Alternative | 15 | 1 | TTG | TGA | NA | No |
chr7|155706859|155738403|+|5|circRNA|RBM33|NM_053043|7,8,9,10,11 | circRBM33(7,8,9,10,11) | RBM33 | LFLLRVLYHSLSQDQHLISKDSSQCSQESGPYDQPCSLQVRWGFCTLASLGRQPHGPSFLLDSRSCQAQDSRFCPHTHSPTCRAFSRGQGSIA | QPHGPSFLLDSR | No | Alternative | Junction | 12 | 1 | CTG | TGA | TransCirc | No |
chr7|155706859|155738403|+|5|circRNA|RBM33|NM_053043|7,8,9,10,11 | circRBM33(7,8,9,10,11) | RBM33 | LFLLRVLYHSLSQDQHLISKDSSQCSQESGPYDQPCSLQVRWGFCTLASLGRQPHGPSFLLDSRSCQAQDSRFCPHTHSPTCRAFSRGQGSIA | SCQAQDSR | No | Alternative | Junction | 8 | 1 | CTG | TGA | TransCirc | No |
chr7|155737529|155738403|+|2|circRNA|RBM33|NM_053043|10,11 | circRBM33(10,11) | RBM33 | LFLLRVLYHSLSQDQHLISKDSSQCSQESGPYDQPCSLQVRWGFCTLASLGRQPHGPSFLLDSRSCQAQDSRFCPHTHSPTCRALQNFHSIHLDLFPTVSASPHDSLSRTSGEPHPRLRIETLSS | TSGEPHPRLR | No | Alternative | Junction | 10 | 1 | CTG | TAG | TransCirc | No |
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