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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|145774505|145903215|-|10|circRNA|ZNF827|ENST00000508784.5|11,10,9,8,7,6,5,4,3,2 | circZNF827(11,10,9,8,7,6,5,4,3,2) | ZNF827 | LAPSTQMLVGRKRRRESSVKENTGMETLQRLRQKHPMGKSRRTISCLWRTGSRSSPRPRTPPWEARLPAATRWSWWHWTVRSCETHCSVKITFPRECLLCVTMTQAPTSP | ITFPRECLLCVTMTQAPTSP | Yes | Alternative | Junction | 20 | 3 | TTG | TGA | riboCIRC,TransCirc | No |
chr4|145774505|145903215|-|10|circRNA|ZNF827|ENST00000508784.5|11,10,9,8,7,6,5,4,3,2 | circZNF827(11,10,9,8,7,6,5,4,3,2) | ZNF827 | LAPSTQMLVGRKRRRESSVKENTGMETLQRLRQKHPMGKSRRTISCLWRTGSRSSPRPRTPPWEARLPAATRWSWWHWTVRSCETHCSVKITFPRECLLCVTMTQAPTSP | LAPSTQMLVGR | Yes | Junction | Junction | 11 | 3 | TTG | TGA | riboCIRC,TransCirc | No |
chr4|145774505|145903215|-|10|circRNA|ZNF827|ENST00000508784.5|11,10,9,8,7,6,5,4,3,2 | circZNF827(11,10,9,8,7,6,5,4,3,2) | ZNF827 | LAPSTQMLVGRKRRRESSVKENTGMETLQRLRQKHPMGKSRRTISCLWRTGSRSSPRPRTPPWEARLPAATRWSWWHWTVRSCETHCSVKITFPRECLLCVTMTQAPTSP | LAPSTQMLVGRK | Yes | Junction | Junction | 12 | 3 | TTG | TGA | riboCIRC,TransCirc | No |
chr4|145774505|145903215|-|10|circRNA|ZNF827|ENST00000508784.5|11,10,9,8,7,6,5,4,3,2 | circZNF827(11,10,9,8,7,6,5,4,3,2) | ZNF827 | LAPSTQMLVGRKRRRESSVKENTGMETLQRLRQKHPMGKSRRTISCLWRTGSRSSPRPRTPPWEARLPAATRWSWWHWTVRSCETHCSVKITFPRECLLCVTMTQAPTSP | LPAATRWSWWHWTVR | Yes | Alternative | Junction | 15 | 3 | TTG | TGA | riboCIRC,TransCirc | No |
chr4|145774505|145903215|-|10|circRNA|ZNF827|ENST00000508784.5|11,10,9,8,7,6,5,4,3,2 | circZNF827(11,10,9,8,7,6,5,4,3,2) | ZNF827 | LAPSTQMLVGRKRRRESSVKENTGMETLQRLRQKHPMGKSRRTISCLWRTGSRSSPRPRTPPWEARLPAATRWSWWHWTVRSCETHCSVKITFPRECLLCVTMTQAPTSP | QKHPMGK | Yes | Alternative | Junction | 7 | 3 | TTG | TGA | riboCIRC,TransCirc | No |
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