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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|139517884|139533366|-|5|circRNA|SETD7|NM_001306199|7,6,5,4,3 | circSETD7(7,6,5,4,3) | SETD7 | LTAGTGPLMGTPSPLMKKRSLMCLSPITTYPSTVPPWDTRQITPSLQTASTISPWRGIMWMMPCRAREFTLTKMGEFSRARM | MGEFSRAR | No | Alternative | Junction | 8 | 2 | TTG | TAG | NA | No |
chr4|139517884|139533366|-|5|circRNA|SETD7|NM_001306199|7,6,5,4,3 | circSETD7(7,6,5,4,3) | SETD7 | LTAGTGPLMGTPSPLMKKRSLMCLSPITTYPSTVPPWDTRQITPSLQTASTISPWRGIMWMMPCRAREFTLTKMGEFSRARM | QITPSLQTASTISPWR | No | Junction | Junction | 16 | 2 | TTG | TAG | NA | No |
chr4|139517884|139533366|-|5|circRNA|SETD7|NM_001306199|7,6,5,4,3 | circSETD7(7,6,5,4,3) | SETD7 | LTAGTGPLMGTPSPLMKKRSLMCLSPITTYPSTVPPWDTRQITPSLQTASTISPWRGIMWMMPCRAREFTLTKMGEFSRARM | SLMCLSPITTYPSTVPPWDTRQITPSLQTASTISPWR | No | Junction | Junction | 37 | 2 | TTG | TAG | NA | No |
chr4|139889356|139890967|-|2|circRNA|MAML3|NM_018717|3,2 | circMAML3(3,2) | MAML3 | MSPWDLPRRGLLLLVLPFLLSPRPLVYLLLPALPQLQTLQAHQQTVLSSPLKLQTKPTLQAKLHLGLEMVIS | LQTKPTLQAK | No | Alternative | Alternative | 10 | 2 | ATG | TGA | TransCirc | No |
chr4|139889356|139890967|-|2|circRNA|MAML3|NM_018717|3,2 | circMAML3(3,2) | MAML3 | MVGSLRLNFLSTVAVTWRIASPSCRAKTSNKNLSMTLLA | IASPSCR | No | Alternative | Alternative | 7 | 2 | ATG | TAG | TransCirc | No |
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