top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr4|128888678|128946152|-|5|circRNA|SCLT1|ENST00000281142.9|20,19,18,17,16 | circSCLT1(20,19,18,17,16) | SCLT1 | LLQLPSRFTVKAEEMRVITENWKKCTKDSWFQSVQKMIFS | VITENWKK | No | Alternative | Junction | 8 | 2 | CTG | TAA | TransCirc | No |
chr4|128936654|128965318|-|8|circRNA|SCLT1|ENST00000281142.9|18,17,16,15,14,13,12,11 | circSCLT1(18,17,16,15,14,13,12,11) | SCLT1 | MEHEFSIKERGFEVQLREMEDSNRNSIVELRHLLATQQKAANRWKEETKKLTESAEIRINNLKRRMWCLPMEERKHQIGVYSSYSLV | HQIGVYSSYSLV | No | Alternative | Junction | 12 | 1 | ATG | TAA | TransCirc | No |
chr4|1348089|1354847|+|5|circRNA|UVSSA|ENST00000511216.5|2,3,4,5,6 | circUVSSA(2,3,4,5,6) | UVSSA | LLSSTPPATHSSSSGTSSCRLCARGSRYGSETFEVGRRAHNFRRTPTKS | LCARGSR | No | Alternative | Junction | 7 | 1 | TTG | TGA | TransCirc | No |
chr4|1349523|1355245|+|5|circRNA|UVSSA|ENST00000511216.5|3,4,5,6,7 | circUVSSA(3,4,5,6,7) | UVSSA | LKAELELVLRKYKELDIEPEGGERRRVFRGAAEPRLPPADSTADPGARRDPSLSLPDCGGTLRQVSPVPDAGCFQLPGVPGAHAGHRPRTASAAPQGGGTEAEAGDHPGRGRVE | GAAEPRLPPADSTADPGAR | No | Alternative | Junction | 19 | 1 | CTG | TGA | TransCirc | No |
chr4|1349523|1366431|+|6|circRNA|UVSSA|ENST00000511216.5|3,4,5,6,7,8 | circUVSSA(3,4,5,6,7,8) | UVSSA | MRRKMRTMRTLWRSLRRRGMSHTSPTTCGLSMVFRGAAEPRLPPADSTADPGARRDPSLSLPDCGGTLRQVSPVPDAGCFQLPGVPGAHAGHRPRTASAAPQGGGTEAEAGDHPGRGRVE | GMSHTSPTTCGLSMVFR | No | Junction | Junction | 17 | 2 | ATG | TGA | TransCirc | No |
Page 1 of 1
bottom of page