top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|8936078|8939553|-|1|ciRNA|RAD18|ENST00000264926.6|6 | ciRAD18(6) | RAD18 | MSYPTPPPHPPGIVANKLSAQYLHLNNCAVLPPLYMKITVISHASPLLLHI | LSAQYLHLNNCAVLPPLYMK | No | Alternative | Alternative | 20 | 1 | ATG | TAA | NA | No |
chr3|8936078|8939553|-|1|ciRNA|RAD18|ENST00000264926.6|6 | ciRAD18(6) | RAD18 | MYYSVPLNHGRKINVIFVFGETFIRFHVLKFLIEIVDLWWCFLL | MYYSVPLNHGRK | No | Alternative | Alternative | 12 | 2 | ATG | TAA | NA | No |
chr3|9424466|9435906|+|8|circRNA|SETD5|ENST00000431285.5|2,3,4,5,6,7,8,9 | circSETD5(2,3,4,5,6,7,8,9) | SETD5 | LLEEPNPRSGKRVQKRVVQHQRRRKSRSSELLADNLGGLHIQKSI | LLEEPNPR | No | Alternative | Junction | 8 | 1 | CTG | TAA | TransCirc | No |
chr3|9424466|9453868|+|16|circRNA|SETD5|NM_001080517|2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17 | circSETD5(2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17) | SETD5 | LYPKRLELSTYTKAMRIVALLVSAKTMQVFRTTSR | IVALLVSAKTMQVFR | No | Junction | Junction | 15 | 2 | CTG | TAA | NA | No |
chr3|9445047|9453868|+|6|circRNA|SETD5|NM_001080517|12,13,14,15,16,17 | circSETD5(12,13,14,15,16,17) | SETD5 | MTQTSSVPQETRTQHLYQSNENSSSSSICKDNAVIIKWTVPVTRETGIVLYKKGILMLQNCHSYHLLQAYPPLEQRLDVEKHDGKS | DNAVIIKWTVPVTR | No | Junction | Junction | 14 | 1 | ATG | TAG | TransCirc | No |
Page 1 of 1
bottom of page