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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr3|49967469|49999513|+|4|circRNA|RBM6|ENST00000266022.8|3,4,5,6 | circRBM6(3,4,5,6) | RBM6 | LRGVFTLGRCHRMHGGQPVGAKKKGLLPGGTGIILLLPLRVMLKRDTLATFLAEIHFPLISRGIRGLLLQM | MHGGQPVGAK | No | Junction | Junction | 10 | 2 | CTG | TAG | NA | No |
chr3|50288582|50289762|-|5|circRNA|IFRD2|ENST00000417626.6|10,9,8,7,6 | circIFRD2(10,9,8,7,6) | IFRD2 | LGSAPDLRCLQGSAGFGHAPPPPVCFCPWPGLLRGCR | LGSAPDLR | No | Alternative | Junction | 8 | 3 | CTG | TGA | TransCirc | No |
chr3|50778674|51090384|+|8|circRNA|DOCK3|ENST00000266037.9|2,3,4,5,6,7,8,9 | circDOCK3(2,3,4,5,6,7,8,9) | DOCK3 | MRPRHGETCRMPVPHHFFLSLKSFTYNTIGEDTDVFFSLYDMREGKQISDMQLSRICPSRVGLRNRRNSPDS | QISDMQLSR | No | Junction | Junction | 9 | 1 | ATG | TGA | TransCirc | No |
chr3|51419733|51422431|-|2|circRNA|VPRBP|ENST00000423656.5|14,13 | circVPRBP(14,13) | VPRBP | LRVSSSSMMLKFRSQHFRLSSIVCVAQITEYPVLVNLSLVLLGESCLRTLKAVSTPWPRCGMWFSPTTASRCSCPYCPLRCPSQMQTKSGPWPAKP | LRVSSSSMMLK | No | Alternative | Alternative | 11 | 1 | CTG | TAG | TransCirc | No |
chr3|51419733|51422431|-|2|circRNA|VPRBP|ENST00000423656.5|14,13 | circVPRBP(14,13) | VPRBP | LVESVLSERGHHPAMAGKSECCGRSRTMVPTAKAQP | LVESVLSER | No | Alternative | Alternative | 9 | 1 | TTG | TAA | TransCirc | No |
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