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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|93247542|93247834|+|1|circRNA|WNK2|ENST00000448039.5|7 | circWNK2(7) | WNK2 | LARAAAQGAAGCGQPGQGQGSAGAPAGPGDLPCTGWAARATRARGAGGRPAPPATYVADQRHLPGLLSLDSSTRVTSRSWPSPSVTAWP | HLPGLLSLDSSTRVTSR | No | Junction | Junction | 17 | 3 | CTG | TGA | TransCirc | No |
chr9|93629969|93645789|+|3|circRNA|PHF2|ENST00000359246.8|2,3,4 | circPHF2(2,3,4) | PHF2 | LKTWWPVCQEVSSRWATWRSTASPSPSSSLRKTGWVWLSRPPRSMSVTSRTTWLCWGGRGGGARHRHIPLPKL | STASPSPSSSLR | No | Alternative | Junction | 12 | 3 | CTG | TGA | TransCirc | No |
chr9|93629969|93645789|+|3|circRNA|PHF2|ENST00000359246.8|2,3,4 | circPHF2(2,3,4) | PHF2 | LKTWWPVCQEVSSRWATWRSTASPSPSSSLRKTGWVWLSRPPRSMSVTSRTTWLCWGGRGGGARHRHIPLPKL | TTWLCWGGR | No | Junction | Junction | 9 | 3 | CTG | TGA | TransCirc | No |
chr9|94064733|94087911|+|3|circRNA|PTPDC1|ENST00000375360.7|2,3,4 | circPTPDC1(2,3,4) | PTPDC1 | LAMARPSSELLEKYHIIDQFLRLPWLQESCLRMNNHILPW | LPWLQESCLR | No | Alternative | Junction | 10 | 2 | CTG | TGA | TransCirc | No |
chr9|94085250|94095454|+|4|circRNA|PTPDC1|ENST00000375360.7|3,4,5,6 | circPTPDC1(3,4,5,6) | PTPDC1 | MEGLWCSVSYYYPRYGEGDDICLTGRKSSYPLSCRAWSNRKFRTSNTKVHKSRGAFTACHSWTHGMFHGVWR | GAFTACHSWTHGMFHGVWR | No | Alternative | Junction | 19 | 2 | ATG | TAG | TransCirc | No |
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