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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|85596361|85655320|-|8|circRNA|AGTPBP1|NM_001286715|17,16,15,14,13,12,11,10 | circAGTPBP1(17,16,15,14,13,12,11,10) | AGTPBP1 | MPDHGGFVWGLTFVTIRMSGSQDSGSSCQYLQSDNEEVFPKKSTATPNN | MPDHGGFVWGLTFVTIR | No | Junction | Junction | 17 | 1 | ATG | TAA | TransCirc | No |
chr9|85822879|85829606|+|2|circRNA|RP11-213G2.3|NR_029410|3,4 | circRP11-213G2.3(3,4) | RP11-213G2.3 | LEVKELKNQVQMMVQENKGHAVSLKEAQKVNRLQLQLWRAKRVSFFELFKKYFKASLNILALTLM | YFKASLNILALTLM | No | Alternative | Junction | 14 | 1 | CTG | TGA | NA | No |
chr9|86034960|86035367|-|1|ciRNA|GOLM1|NM_016548|8 | ciGOLM1(8) | GOLM1 | MSFPAPTYHPEFYQTAVHNLPIPFRLKVSYSLSRGRQEGRAAYALELEVLDAILAGSRGDLASGWPADGCLASSGRPLLAGRPHAPFLYVHRRAVSGAI | AAYALELEVLDAILAGSR | No | Alternative | Alternative | 18 | 3 | ATG | TAG | NA | No |
chr9|86301275|86353230|-|26|circRNA|ZCCHC6|ENST00000277141.10|27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circZCCHC6(27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10,9,8,7,6,5,4,3,2) | ZCCHC6 | LNQRYPENKEKRSKEDKEIHNKYTEREVSTKEDKPIQCTPQKAKPMRAAADLGREKILRPPVEKWKRQDDKDLREKRCFICGREGHIKKECPQFKGSSGAK | ECPQFKGSSGAK | No | Junction | Junction | 12 | 2 | CTG | TAA | TransCirc | No |
chr9|90874671|90888627|+|5|circRNA|SYK|NM_001135052|8,9,10,11,12 | circSYK(8,9,10,11,12) | SYK | MKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYEPPERSPTHGHRGVREPLRGPRGDQAQGGLPGPKAADAGRQRTGLW | GVREPLR | No | Alternative | Junction | 7 | 1 | ATG | TAA | TransCirc | No |
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