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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|676889|713464|+|2|circRNA|KANK1|ENST00000382303.5|6,7 | circKANK1(6,7) | KANK1 | LAWITTLSVSRSCWQNSRHCWLRTTVNWQKLSGNLTHRWAPSTLSSSAPCRLSTLS | LSGNLTHR | No | Alternative | Alternative | 8 | 1 | CTG | TGA | TransCirc | No |
chr9|67862940|67868566|+|4|circRNA|ANKRD20A1|ENST00000562196.5|2,3,4,5 | circANKRD20A1(2,3,4,5) | ANKRD20A1 | LLYTMTHQVLSISFLSKILMSSLKTCVDEMQKIMLFLII | ILMSSLKTCVDEMQK | No | Alternative | Alternative | 15 | 3 | TTG | TGA | NA | No |
chr9|6887959|6893232|+|2|circRNA|RP11-146B14.1|ENST00000535193.2|7,8 | circRP11-146B14.1(7,8) | RP11-146B14.1 | MITFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVAKLVFSQAAPKGVMHFFATR | LVFSQAAPKGVMHFFATR | No | Junction | Junction | 18 | 1 | ATG | TGA | TransCirc | No |
chr9|69236027|69237136|+|2|circRNA|TJP2|ENST00000453658.6|14,15 | circTJP2(14,15) | TJP2 | LLCLSAPSSQLMRGFCCEKCIETSWLVAEGIRFL | CIETSWLVAEGIR | No | Alternative | Junction | 13 | 3 | CTG | TAA | TransCirc | No |
chr9|69516010|69517279|-|1|circRNA|APBA1|ENST00000265381.6|2 | circAPBA1(2) | APBA1 | MPGALSQHGERLPQPHGHRRGRRDRRGPRRLRCGARAGPRGRERLCCAVPARGRGVHGAGRGRARRGHAPPRAAQPPALPLAGARGSHECGLLRLRLHAPALPPR | GSHECGLLR | No | Alternative | Alternative | 9 | 3 | ATG | TGA | TransCirc | No |
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