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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|35295695|35310781|+|2|circRNA|UNC13B|ENST00000617908.4|8,9 | circUNC13B(8,9) | UNC13B | LPQLSQPVQRWPSRFWRTRETLGGDRSSREGGSM | LPQLSQPVQRWPSR | No | Alternative | Alternative | 14 | 1 | TTG | TGA | TransCirc | No |
chr9|35546429|35548535|+|1|circRNA|RUSC2|NM_014806|2 | circRUSC2(2) | RUSC2 | LQQFRWCAGHLQHPLQQDAWHPPCQSQLCPTVLQRLFLLQPLRPWRLLSGSAALPI | LLSGSAALPI | No | Alternative | Alternative | 10 | 2 | CTG | TGA | NA | No |
chr9|35684550|35685063|-|1|ciRNA|TPM2|ENST00000378292.7|6 | ciTPM2(6) | TPM2 | LMACVCPQKVVTPLNLSGQWRLLSAHLPSVSAPQAALSQLLGIRKGLGLLSPACCHSHNFALLFSPPPVPCCAISTVWLRCALTPCPPRHTPPAVNVGT | VVTPLNLSGQWR | No | Alternative | Junction | 12 | 1 | CTG | TAG | NA | No |
chr9|35684550|35685063|-|1|ciRNA|TPM2|ENST00000378292.7|6 | ciTPM2(6) | TPM2 | MWGPRGGAENCYQQLEIPGGPGGQGRGEQRGSEDGVPQGREVRGPRQGGAGCSTEAR | GSEDGVPQGR | No | Alternative | Alternative | 10 | 2 | ATG | TGA | NA | No |
chr9|35684550|35685063|-|1|ciRNA|TPM2|ENST00000378292.7|6 | ciTPM2(6) | TPM2 | MWGPRGGAENCYQQLEIPGGPGGQGRGEQRGSEDGVPQGREVRGPRQGGAGCSTEAR | GSEDGVPQGREVR | No | Alternative | Alternative | 13 | 2 | ATG | TGA | NA | No |
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