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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|20881870|20885230|+|2|circRNA|FOCAD|ENST00000380249.5|22,23 | circFOCAD(22,23) | FOCAD | MLFCYDVSMYQSKDGKPLNRLMASRGRSFKQTSLALVHELWRNFLHHL | LWRNFLHHL | No | Alternative | Junction | 9 | 3 | ATG | TGA | TransCirc | No |
chr9|20948270|20953065|+|5|circRNA|FOCAD|ENST00000380249.5|33,34,35,36,37 | circFOCAD(33,34,35,36,37) | FOCAD | LPESSFIGAAIGFFITGGKKDFRFCPGFRKHSSWIVCVWTWKS | DFRFCPGFR | No | Alternative | Junction | 9 | 3 | TTG | TGA | TransCirc | No |
chr9|20948270|20953065|+|5|circRNA|FOCAD|ENST00000380249.5|33,34,35,36,37 | circFOCAD(33,34,35,36,37) | FOCAD | LPESSFIGAAIGFFITGGKKDFRFCPGFRKHSSWIVCVWTWKS | HSSWIVCVWTWK | No | Alternative | Junction | 12 | 3 | TTG | TGA | TransCirc | No |
chr9|27009019|27048274|+|8|circRNA|IFT74|ENST00000433700.5|9,10,11,12,13,14,15,16 | circIFT74(9,10,11,12,13,14,15,16) | IFT74 | MMQDDLNFKSTEVQKSQSTAQNLTSGKKNKSEVSKKKLNRKNKQQMTLSKICLLKTKSST | STEVQKSQSTAQNLTSGK | No | Junction | Junction | 18 | 1 | ATG | TAG | TransCirc | No |
chr9|27271926|27274286|-|2|circRNA|LINC00032|ENST00000425633.1|9,8 | circLINC00032(9,8) | LINC00032 | MAHRKRHSVTSEFLSKVPDEVRQRYINLFVEKYLKVCKTEDEAVYKASTNKEVIRPFRVPVPLLTSPTGIIRAQQSSTDKGCHKEWEGFY | YINLFVEK | No | Alternative | Junction | 8 | 1 | ATG | TGA | NA | No |
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