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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|131474453|131476535|+|1|circRNA|PRRC2B|ENST00000357304.8|15 | circPRRC2B(15) | PRRC2B | MDGEPSSPKSHPTGRAKVQAALGRNMALPTHADPGDLQTETMSQIPTDTLTHLVAGALRTAARRTRDPSSKMNTWQILKMQRTGPSGEGAPHAKISPLDSGASGKSGSPWACGDPRRSPTCWQVSGQAGPNCVLGTRVALWAAGPLSSPTRTPPITPMRSGRRPPKAATSASGGSGGKALGPSPTPRWMVACRGLVWVRRRSWPRGASPVRDPWLTDRAESWSREGLGRSPLGQVVVTPPLAMRANRMGRL | AATSASGGSGGKALGPSPTPR | No | Alternative | Alternative | 21 | 3 | ATG | TGA | NA | No |
chr9|131627912|131630324|-|4|circRNA|RAPGEF1|NM_198679|9,8,7,6 | circRAPGEF1(9,8,7,6) | RAPGEF1 | LSGGSHSYGGESPRLSPCSSIGKLSKSDEQLSSLDRDSGQCSRNTSCETLGAGQAHHREAGTSVSDEPREAQFPCQQA | EAGTSVSDEPR | No | Alternative | Junction | 11 | 1 | CTG | TGA | TransCirc | No |
chr9|132400034|132402828|-|2|circRNA|TTF1|NM_007344|3,2 | circTTF1(3,2).A | TTF1 | LLSHMHINQKPCTVKLGRKRIKSIRGKLHPGRASGQGTPCLSQNPTRRSPGFLWVQGVKLQNYQHLLIKTSLRKKRKSPVTGNMRHWPCLKDRKQAERPGLICRNPSLLWAWMMKLHNY | ASGQGTPCLSQNPTR | No | Alternative | Alternative | 15 | 2 | TTG | TAG | NA | No |
chr9|132400034|132402828|-|2|circRNA|TTF1|NM_007344|3,2 | circTTF1(3,2).A | TTF1 | LLSHMHINQKPCTVKLGRKRIKSIRGKLHPGRASGQGTPCLSQNPTRRSPGFLWVQGVKLQNYQHLLIKTSLRKKRKSPVTGNMRHWPCLKDRKQAERPGLICRNPSLLWAWMMKLHNY | KSPVTGNMR | No | Alternative | Alternative | 9 | 2 | TTG | TAG | NA | No |
chr9|132677976|132679803|+|1|circRNA|GTF3C4|ENST00000372146.4|2 | circGTF3C4(2) | GTF3C4 | LRSMENVFMRPVTGSLKMRPRKEISGILLSFRGDTACRPQSEWSGRASVPPSRSSITTNAGTLAVCSWLSSLKTVISPCGSFSCRL | GDTACRPQSEWSGR | No | Alternative | Alternative | 14 | 2 | CTG | TAG | TransCirc | No |
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