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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|140094055|140102160|-|7|circRNA|KDM7A|NM_030647|18,17,16,15,14,13,12 | circKDM7A(18,17,16,15,14,13,12) | KDM7A | LILPDFILRRKTANQLNLREFLLCVQFHDPQMKQLPHTIPEER | QLPHTIPEER | No | Alternative | Junction | 10 | 1 | TTG | TGA | NA | No |
chr7|140119112|140120529|-|2|circRNA|KDM7A|NM_030647|9,8 | circKDM7A(9,8) | KDM7A | MLVCSQKLAGNPERVDPCCAHFSGLYGFWGELPAQP | LAGNPER | No | Alternative | Junction | 7 | 1 | ATG | TAA | TransCirc | No |
chr7|140119112|140120529|-|2|circRNA|KDM7A|NM_030647|9,8 | circKDM7A(9,8) | KDM7A | MLVCSQKLAGNPERVDPCCAHFSGLYGFWGELPAQP | LAGNPERVDPCCAHFSGLYGFWGELPAQP | No | Junction | Junction | 29 | 1 | ATG | TAA | TransCirc | No |
chr7|140124620|140139190|-|6|circRNA|KDM7A|NM_030647|7,6,5,4,3,2 | circKDM7A(7,6,5,4,3,2) | KDM7A | LARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTAVLE | QGHTLFVPTAVLE | No | Junction | Junction | 13 | 1 | TTG | TAG | TransCirc | No |
chr7|140343411|140348767|-|4|circRNA|SLC37A3|ENST00000477571.5|12,11,10,9 | circSLC37A3(12,11,10,9) | SLC37A3 | LLFLRTWVARSSSKGAVKLWPLSQELWMVRGALELQWASTHWPTPA | GALELQWASTHWPTPA | No | Junction | Junction | 16 | 1 | CTG | TGA | TransCirc | No |
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