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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|128969399|128981390|+|6|circRNA|NUP188|NM_015354|10,11,12,13,14,15 | circNUP188(10,11,12,13,14,15) | NUP188 | MKMELFGGDKHPNSFIPLLLQCPHPGGGHGYRVLA | HPNSFIPLLLQCPHPGGGHGYRVLA | No | Junction | Junction | 25 | 2 | ATG | TAA | TransCirc | No |
chr9|128969399|128981390|+|6|circRNA|NUP188|NM_015354|10,11,12,13,14,15 | circNUP188(10,11,12,13,14,15) | NUP188 | MKMELFGGDKHPNSFIPLLLQCPHPGGGHGYRVLA | MELFGGDK | No | Alternative | Junction | 8 | 2 | ATG | TAA | TransCirc | No |
chr9|129638684|129639201|-|1|ciRNA|ASB6|ENST00000450050.6|4 | ciASB6(4) | ASB6 | LDFCHLLWVALTWASWPPARGCLLQESRTAGPPGTLWGTPRVPQDNS | LDFCHLLWVALTWASWPPARGCLLQESR | No | Junction | Junction | 28 | 1 | CTG | TAG | NA | No |
chr9|129638684|129639201|-|1|ciRNA|ASB6|ENST00000450050.6|4 | ciASB6(4) | ASB6 | LGEAQPTSQVASWGPEKSYLSWPFRSHFSGWKGNGQKPVTLSPHLS | LGEAQPTSQVASWGPEK | No | Alternative | Alternative | 17 | 1 | TTG | TGA | NA | No |
chr9|129638684|129639201|-|1|ciRNA|ASB6|ENST00000450050.6|4 | ciASB6(4) | ASB6 | LVAQHGWAHRDSADLLSSEASERQCSHCPCAGPQGPSIGRNRACVHLVSKKQWLPIGRGPANISGSILGSRKILPFLAFPLPLLWVEREWPEACHPQPSPELRVVSESSSSDPLSVWISATSSGLP | GPANISGSILGSR | No | Alternative | Alternative | 13 | 2 | CTG | TGA | NA | No |
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