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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|128345154|128345549|+|1|circRNA|SLC27A4|NM_005094|3 | circSLC27A4(3) | SLC27A4 | MWLPSSWRTAMSSWAYGWAWPSSVWRQPSSTPTCGGMLCSTASPPRAHGPLSLAAKWPQWRPGPPEGEGKGATVPAGAADSAHFVCLYRSAPPRQDGPDLRGHRYPLDLPPAG | AHGPLSLAAK | No | Alternative | Junction | 10 | 3 | ATG | TGA | TransCirc | No |
chr9|128431170|128434613|+|3|circRNA|CERCAM|ENST00000372842.5|10,11,12 | circCERCAM(10,11,12) | CERCAM | LRRRRPWRGCRAWWWLGTPTGRWPMPCVWRVPASCWPHSLCAACCPWTSSCPSCSTSTPRCSTAVPSGTSA | AWWWLGTPTGR | No | Alternative | Junction | 11 | 3 | CTG | TAG | TransCirc | No |
chr9|128487889|128492805|+|3|circRNA|ODF2|NM_153436|13,14,15 | circODF2(13,14,15) | ODF2 | MKTRLEADEVAAQLERCDKENKILKDEMNKEIEAPGNRSCKPTTNPGGEDAGRPG | EIEAPGNR | No | Junction | Junction | 8 | 1 | ATG | TAG | TransCirc | No |
chr9|128508875|128515639|+|2|circRNA|GLE1|NM_001499|2,3 | circGLE1(2,3) | GLE1 | LRPNVRTGTQNERNRCFRRMYVSSQAIFLFWMGGRARPTPYAGEPTSV | MYVSSQAIFLFWMGGR | No | Alternative | Junction | 16 | 3 | CTG | TGA | TransCirc | No |
chr9|128508875|128515639|+|2|circRNA|GLE1|NM_001499|2,3 | circGLE1(2,3) | GLE1 | LRPNVRTGTQNERNRCFRRMYVSSQAIFLFWMGGRARPTPYAGEPTSV | RMYVSSQAIFLFWMGGR | No | Alternative | Junction | 17 | 3 | CTG | TGA | TransCirc | No |
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