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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|123440359|123457897|-|6|circRNA|DENND1A|ENST00000394219.7|14,13,12,11,10,9 | circDENND1A(14,13,12,11,10,9) | DENND1A | LPRMAAPPPQKSSCQRLHRPHWWRPRTPSSEKTGGQSQSTLDRRSRSLSVRKPSCPTTAPEP | LHRPHWWRPR | No | Alternative | Junction | 10 | 2 | TTG | TGA | TransCirc | No |
chr9|123440359|123457897|-|6|circRNA|DENND1A|ENST00000394219.7|14,13,12,11,10,9 | circDENND1A(14,13,12,11,10,9) | DENND1A | LPRMAAPPPQKSSCQRLHRPHWWRPRTPSSEKTGGQSQSTLDRRSRSLSVRKPSCPTTAPEP | LHRPHWWRPRTPSSEK | No | Alternative | Junction | 16 | 2 | TTG | TGA | TransCirc | No |
chr9|125153532|125158382|-|3|circRNA|PPP6C|ENST00000373547.8|6,5,4 | circPPP6C(6,5,4) | PPP6C | MSRFCVSMVVYLLISKHWIKFEPSNGIRKFLIKEHFVIWFGQILKMWIPGLSVPEEQVGFLEQRSQMRVIL | FEPSNGIR | No | Alternative | Junction | 8 | 2 | ATG | TAG | TransCirc | No |
chr9|125301982|125305149|+|2|circRNA|GAPVD1|ENST00000497580.5|3,4 | circGAPVD1(3,4).A | GAPVD1 | MLKLPLLNVANMPKFWKIHNLLMGISNWDFRRLLMENS | MLKLPLLNVANMPK | No | Junction | Junction | 14 | 3 | ATG | TGA | riboCIRC,TransCirc | No |
chr9|125330077|125337591|+|5|circRNA|GAPVD1|ENST00000497580.5|11,12,13,14,15 | circGAPVD1(11,12,13,14,15) | GAPVD1 | MKSENSLQLQPLVLLLWWLHLIHHLHPRVRTPQEERCCSREHVRQFAVPPRFRVSAS | EHVRQFAVPPR | No | Alternative | Junction | 11 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
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