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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|112403994|112405722|+|2|circRNA|HSDL2|NM_001195822|2,3 | circHSDL2(2,3) | HSDL2 | MNSRSVLQWRKPSRNLEEAGRMYSFYHRCKPWHWQSYCIESSKGWSKYCYCCKDRPATSKTSRHNLYCC | CKPWHWQSYCIESSKGWSK | No | Alternative | Junction | 19 | 1 | ATG | TGA | TransCirc | No |
chr9|112403994|112405722|+|2|circRNA|HSDL2|NM_001195822|2,3 | circHSDL2(2,3) | HSDL2 | MNSRSVLQWRKPSRNLEEAGRMYSFYHRCKPWHWQSYCIESSKGWSKYCYCCKDRPATSKTSRHNLYCC | DRPATSK | No | Alternative | Junction | 7 | 1 | ATG | TGA | TransCirc | No |
chr9|112403994|112405722|+|2|circRNA|HSDL2|NM_001195822|2,3 | circHSDL2(2,3) | HSDL2 | MNSRSVLQWRKPSRNLEEAGRMYSFYHRCKPWHWQSYCIESSKGWSKYCYCCKDRPATSKTSRHNLYCC | DRPATSKTSR | No | Alternative | Junction | 10 | 1 | ATG | TGA | TransCirc | No |
chr9|112403994|112405722|+|2|circRNA|HSDL2|NM_001195822|2,3 | circHSDL2(2,3) | HSDL2 | MNSRSVLQWRKPSRNLEEAGRMYSFYHRCKPWHWQSYCIESSKGWSKYCYCCKDRPATSKTSRHNLYCC | GWSKYCYCCK | No | Alternative | Junction | 10 | 1 | ATG | TGA | TransCirc | No |
chr9|112403994|112405722|+|2|circRNA|HSDL2|NM_001195822|2,3 | circHSDL2(2,3) | HSDL2 | MNSRSVLQWRKPSRNLEEAGRMYSFYHRCKPWHWQSYCIESSKGWSKYCYCCKDRPATSKTSRHNLYCC | NLEEAGR | No | Alternative | Junction | 7 | 1 | ATG | TGA | TransCirc | No |
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