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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|105299219|105309866|+|2|circRNA|SLC44A1|NM_001286730|2,3 | circSLC44A1(2,3) | SLC44A1 | MEISVGRKIQSWKQYQTVAWTTPSGKLQTRMEAAGGP | LQTRMEAAGGP | No | Alternative | Junction | 11 | 2 | ATG | TAG | TransCirc | No |
chr9|105574944|105635148|+|9|circRNA|FKTN|NM_001198963|3,4,5,6,7,8,9,10,11 | circFKTN(3,4,5,6,7,8,9,10,11) | FKTN | LFPKFTLCWTEFVDMKVHVPCETLEYIEANYENKIIFLSKSKKMKTTEILSKDNQVSSTD | FTLCWTEFVDMKVHVPCETLEYIEANYENK | No | Junction | Junction | 30 | 2 | CTG | TAA | TransCirc | No |
chr9|105574944|105635148|+|9|circRNA|FKTN|NM_001198963|3,4,5,6,7,8,9,10,11 | circFKTN(3,4,5,6,7,8,9,10,11) | FKTN | LFPKFTLCWTEFVDMKVHVPCETLEYIEANYENKIIFLSKSKKMKTTEILSKDNQVSSTD | MKTTEILSK | No | Alternative | Junction | 9 | 2 | CTG | TAA | TransCirc | No |
chr9|105574944|105635148|+|9|circRNA|FKTN|NM_001198963|3,4,5,6,7,8,9,10,11 | circFKTN(3,4,5,6,7,8,9,10,11) | FKTN | LFPKFTLCWTEFVDMKVHVPCETLEYIEANYENKIIFLSKSKKMKTTEILSKDNQVSSTD | VHVPCETLEYIEANYENK | No | Junction | Junction | 18 | 2 | CTG | TAA | TransCirc | No |
chr9|106972004|106974273|+|2|circRNA|ZNF462|NM_021224|8,9 | circZNF462(8,9) | ZNF462 | LLLLCTWKLGTQQFPRRAPKIFAVLSASITPNTSAT | LGTQQFPRR | No | Alternative | Alternative | 9 | 3 | CTG | TGA | TransCirc | No |
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