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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr9|100104497|100293043|+|13|circRNA|INVS|NM_014425|2,3,4,5,6,7,8,9,10,11,12,13,14 | circINVS(2,3,4,5,6,7,8,9,10,11,12,13,14) | INVS | LGLMRKERTPGGQLQAFHRTIATGSPAGGMTQNPRPNVPPRKGALKSSEEEGALRLVLAALAVPGGRRSMLGRILPTIVHQETK | TPGGQLQAFHR | No | Alternative | Alternative | 11 | 1 | CTG | TGA | TransCirc | No |
chr9|100104497|100293043|+|13|circRNA|INVS|NM_014425|2,3,4,5,6,7,8,9,10,11,12,13,14 | circINVS(2,3,4,5,6,7,8,9,10,11,12,13,14) | INVS | LLVSTSDPMKAVMEAGIQEFPLLRSPEVRQLAMSGVQRGKAS | QLAMSGVQR | No | Alternative | Alternative | 9 | 1 | CTG | TGA | TransCirc | No |
chr9|100441905|100442356|+|1|circRNA|MSANTD3|ENST00000395067.6|2 | circMSANTD3(2) | MSANTD3 | LAGAGPRIQLSAQRVPAGFQTAEEVLGEHQGSDQKNYGP | LAGAGPR | No | Alternative | Alternative | 7 | 1 | CTG | TGA | TransCirc | No |
chr9|100441905|100442356|+|1|circRNA|MSANTD3|ENST00000395067.6|2 | circMSANTD3(2) | MSANTD3 | LAGAGPRIQLSAQRVPAGFQTAEEVLGEHQGSDQKNYGP | LAGAGPRIQLSAQR | No | Alternative | Alternative | 14 | 1 | CTG | TGA | TransCirc | No |
chr9|100547743|100561520|+|3|circRNA|MSANTD3-TMEFF1|NM_001198812|6,7,8 | circMSANTD3-TMEFF1(6,7,8) | MSANTD3-TMEFF1 | MLVIKEKMFILETTCLALKTSMVTASMENVNSSILLRRLLVGVYVI | MFILETTCLALK | No | Alternative | Junction | 12 | 1 | ATG | TAG | TransCirc | No |
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