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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr7|138871156|138871362|-|1|circRNA|KIAA1549|ENST00000440172.5|13 | circKIAA1549(13) | KIAA1549 | MSSTHQPPSSSTWTGSPAPRRLAGGSPVRSSLSPCSRSRHLPSSAPPQPTEWRKAIKSTKRATTAQFGK | LAGGSPVR | No | Alternative | Junction | 8 | 1 | ATG | TGA | TransCirc | No |
chr7|138894341|138919438|-|9|circRNA|KIAA1549|ENST00000440172.5|10,9,8,7,6,5,4,3,2 | circKIAA1549(10,9,8,7,6,5,4,3,2) | KIAA1549 | MLSPPVISTPFGQLFAPLRASFQLLAGIWCFILLMLTVIYQAGLCQRLWLP | MLSPPVISTPFGQLFAPLR | No | Alternative | Alternative | 19 | 3 | ATG | TAA | TransCirc | No |
chr7|139028701|139034678|-|2|circRNA|ZC3HAV1L|ENST00000275766.1|3,2 | circZC3HAV1L(3,2) | ZC3HAV1L | LLYNKGEALYGYCNLKDKCNKFHVCKSFVKGECKLQTCKRSHQLIHAASLKLLQDQGLNIPSVVNFQIISTYKHMKLHKMLENTGLPVPFPMISTHLSTCRS | LHKMLENTGLPVPFPMISTHLSTCR | No | Junction | Junction | 25 | 1 | TTG | TGA | TransCirc | No |
chr7|139061035|139084032|-|7|circRNA|ZC3HAV1|ENST00000242351.9|9,8,7,6,5,4,3 | circZC3HAV1(9,8,7,6,5,4,3) | ZC3HAV1 | MIQTNIASKTQKDVIRRPTFVPQWYVQQMKRGPEYAKVIRERVGSRFVTSSHRVQDSTSVTTSPEGTVVFPTASGPIT | FVTSSHR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
chr7|139073855|139080243|-|4|circRNA|ZC3HAV1|ENST00000242351.9|7,6,5,4 | circZC3HAV1(7,6,5,4) | ZC3HAV1 | LSPSQPILSSPPNGFGIGRMNLAHGFSMEKSSFFTS | LSPSQPILSSPPNGFGIGRMNLAHGFSMEK | No | Alternative | Junction | 30 | 3 | CTG | TAG | TransCirc | No |
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