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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr8|98133948|98140888|+|6|circRNA|POP1|NM_001145860|6,7,8,9,10,11 | circPOP1(6,7,8,9,10,11) | POP1 | LGLTVGDPRINLPQKKSKALPNPEKCQGFILLLLFGVERQRGRNTKGAFWNV | CQGFILLLLFGVERQR | No | Junction | Junction | 16 | 3 | CTG | TAA | TransCirc | No |
chr8|98133948|98140888|+|6|circRNA|POP1|NM_001145860|6,7,8,9,10,11 | circPOP1(6,7,8,9,10,11) | POP1 | LGLTVGDPRINLPQKKSKALPNPEKCQGFILLLLFGVERQRGRNTKGAFWNV | NTKGAFWNV | No | Alternative | Junction | 9 | 3 | CTG | TAA | TransCirc | No |
chr8|99013759|99038566|+|2|circRNA|VPS13B|NM_181661|2,3 | circVPS13B(2,3) | VPS13B | LKLPFTFLSGHIHELRIHVPWTKLGSEPVVITINTMECILKLKDGIQLPTSTPYLKRCWSHM | LPTSTPYLK | No | Alternative | Junction | 9 | 1 | CTG | TAA | riboCIRC,TransCirc | No |
chr8|99501686|99721047|+|14|circRNA|VPS13B|ENST00000357162.6|26,27,28,29,30,31,32,33,34,35,36,37,38,39 | circVPS13B(26,27,28,29,30,31,32,33,34,35,36,37,38,39) | VPS13B | LYLLTPQRIQILAQQTLVMCYREILYKQVRNHHSQIL | IQILAQQTLVMCYREILYK | No | Junction | Junction | 19 | 1 | CTG | TGA | TransCirc | No |
chr8|99511103|99511512|+|1|circRNA|VPS13B|ENST00000496144.5|30 | circVPS13B(30) | VPS13B | LTYTKAVTKNVRHKLTSRNERRSFHKLSEGLMDGSPHFLHEILLSAQAFDIVLYFPLLNAIASIFQAKLPKTQKEKRKSPGQPMRTHTLTSRNLPLIYVNTSVIRIFIPKTEEMQPTVEDNYKTSRWHSSAAWIPLSDIHKSCNKKCPPQVNIKK | KCPPQVNIK | No | Alternative | Junction | 9 | 1 | CTG | TGA | TransCirc | No |
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