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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|60933744|60934456|+|1|ciRNA|TMEM132A|NM_017870|8 | ciTMEM132A(8) | TMEM132A | MNTLGGGSPKPRERWPTPLESSFQALQRVSAPRVPVRERLPCGPLGSKSGDRGTAPVGSGLGRLACRWKGLTPRGADVCV | GTAPVGSGLGR | No | Alternative | Alternative | 11 | 1 | ATG | TGA | NA | No |
chr11|60933744|60934456|+|1|ciRNA|TMEM132A|NM_017870|8 | ciTMEM132A(8) | TMEM132A | MNTLGGGSPKPRERWPTPLESSFQALQRVSAPRVPVRERLPCGPLGSKSGDRGTAPVGSGLGRLACRWKGLTPRGADVCV | LPCGPLGSKSGDR | No | Alternative | Alternative | 13 | 1 | ATG | TGA | NA | No |
chr11|61325610|61330074|-|4|circRNA|DDB1|NM_001923|6,5,4,3 | circDDB1(6,5,4,3) | DDB1 | LGGPSSLDRSQSPITMVTNTWLLPLLSSRGRARTCCLS | LGGPSSLDR | No | Alternative | Junction | 9 | 1 | TTG | TGA | TransCirc | No |
chr11|61410937|61415784|-|3|circRNA|CPSF7|ENST00000340437.8|9,8,7 | circCPSF7(9,8,7) | CPSF7 | MKIGMMIISKKGTGSMRDTGIENGTGTTEKAEIRALHPLQ | KGTGSMR | No | Alternative | Junction | 7 | 3 | ATG | TGA | TransCirc | No |
chr11|61966459|61966988|-|1|ciRNA|FTH1|ENST00000532601.1|1 | ciFTH1(1) | FTH1 | LGAGGRWLILWVDPSRAAVSTSRLCLSLSPTCFEAYL | LGAGGRWLILWVDPSR | No | Alternative | Alternative | 16 | 2 | TTG | TAG | NA | No |
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