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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|47472190|47489024|-|12|circRNA|CELF1|NM_198700|13,12,11,10,9,8,7,6,5,4,3,2 | circCELF1(13,12,11,10,9,8,7,6,5,4,3,2) | CELF1 | LMLSRCLWARFQGPGLKRTCGNSSNSMVLCMKSTS | FQGPGLKR | No | Alternative | Alternative | 8 | 2 | TTG | TAA | NA | No |
chr11|47719928|47751290|-|12|circRNA|FNBP4|ENST00000263773.9|16,15,14,13,12,11,10,9,8,7,6,5 | circFNBP4(16,15,14,13,12,11,10,9,8,7,6,5) | FNBP4 | MPSLVKKWQSIQRELDEEDNSSSSEEDRESTAQKRIEEWKQQQLVSRN | IEEWKQQQLVSR | No | Junction | Junction | 12 | 1 | ATG | TGA | TransCirc | No |
chr11|47734024|47751290|-|6|circRNA|FNBP4|ENST00000263773.9|10,9,8,7,6,5 | circFNBP4(10,9,8,7,6,5) | FNBP4 | LANTLTSKFEFLGINRQSISNFHVLLLQTESELRWAIGRKSGMRTRDVIIIGIHKQMK | QSISNFHVLLLQTESELRWAIGR | No | Junction | Junction | 23 | 1 | CTG | TGA | TransCirc | No |
chr11|47743952|47754664|-|6|circRNA|FNBP4|ENST00000263773.9|8,7,6,5,4,3 | circFNBP4(8,7,6,5,4,3) | FNBP4 | MVVCQGLVHVLISASQHLKMECVGLCLKEENGRCLFELPVQNLPVGVLVKLDEILQKMEKLAVYACLVLMLTVMTMTMMFPKN | AVYACLVLMLTVMTMTMMFPK | No | Alternative | Junction | 21 | 2 | ATG | TAG | TransCirc | No |
chr11|47788181|47801930|-|9|circRNA|NUP160|ENST00000378460.6|31,30,29,28,27,26,25,24,23 | circNUP160(31,30,29,28,27,26,25,24,23) | NUP160 | MVTLLVQAGLFDTAISLCQTFKLPLTPVFEGLAFKLWNVFVRQHLK | LWNVFVRQHLK | No | Alternative | Junction | 11 | 3 | ATG | TAG | TransCirc | No |
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