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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|43436163|43443584|+|2|circRNA|TTC17|NM_001307943|17,18 | circTTC17(17,18) | TTC17 | MAFGRLWGCTRDERAASRLTRNTGAEERSPGWSGQKLLLWRLQK | MAFGRLWGCTR | No | Alternative | Alternative | 11 | 2 | ATG | TGA | NA | No |
chr11|46378500|46378977|+|1|ciRNA|DGKZ|ENST00000343674.10|27 | ciDGKZ(27) | DGKZ | MRTSSRLQFLPPAAPSGPGERGLWVGPRADLLRCCHLSSSGPLWDLQ | GLWVGPR | No | Alternative | Junction | 7 | 3 | ATG | TGA | NA | No |
chr11|46417912|46548500|-|15|circRNA|AMBRA1|NM_017749|16,15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circAMBRA1(16,15,14,13,12,11,10,9,8,7,6,5,4,3,2) | AMBRA1 | LELLLAPSFPGPGVTVATERHEGCPRKECCPDTLGARTGCSGHGSSAASAGAGRR | ECCPDTLGARTGCSGHGSSAASAGAGR | Yes | Alternative | Alternative | 27 | 2 | TTG | TAA | TransCirc | No |
chr11|46417912|46548500|-|15|circRNA|AMBRA1|NM_017749|16,15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circAMBRA1(16,15,14,13,12,11,10,9,8,7,6,5,4,3,2) | AMBRA1 | LELLLAPSFPGPGVTVATERHEGCPRKECCPDTLGARTGCSGHGSSAASAGAGRR | KECCPDTLGAR | Yes | Alternative | Alternative | 11 | 2 | TTG | TAA | TransCirc | No |
chr11|46417912|46548500|-|15|circRNA|AMBRA1|NM_017749|16,15,14,13,12,11,10,9,8,7,6,5,4,3,2 | circAMBRA1(16,15,14,13,12,11,10,9,8,7,6,5,4,3,2) | AMBRA1 | LELLLAPSFPGPGVTVATERHEGCPRKECCPDTLGARTGCSGHGSSAASAGAGRR | TGCSGHGSSAASAGAGR | Yes | Alternative | Alternative | 17 | 2 | TTG | TAA | TransCirc | No |
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