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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|34063051|34063363|+|1|circRNA|CAPRIN1|ENST00000532755.5|2 | circCAPRIN1(2) | CAPRIN1 | MAPTELNLKNPFQESNFGGDEKLLGKNGRSRCIAIQHNIII | LLGKNGR | No | Alternative | Alternative | 7 | 2 | ATG | TGA | NA | No |
chr11|34108210|34127599|+|11|circRNA|NAT10|NM_024662|2,3,4,5,6,7,8,9,10,11,12 | circNAT10(2,3,4,5,6,7,8,9,10,11,12) | NAT10 | LGQAELVVIDEAAAIPLPLVKSLLGPYLVFMASTINGNNFSPCIGKRWITESGFSLRME | RWITESGFSLR | No | Alternative | Junction | 11 | 1 | CTG | TAG | TransCirc | No |
chr11|34108210|34127599|+|11|circRNA|NAT10|NM_024662|2,3,4,5,6,7,8,9,10,11,12 | circNAT10(2,3,4,5,6,7,8,9,10,11,12) | NAT10 | LGQAELVVIDEAAAIPLPLVKSLLGPYLVFMASTINGNNFSPCIGKRWITESGFSLRME | SLLGPYLVFMASTINGNNFSPCIGK | No | Junction | Junction | 25 | 1 | CTG | TAG | TransCirc | No |
chr11|34115822|34122592|+|4|circRNA|NAT10|NM_001144030|4,5,6,7 | circNAT10(4,5,6,7) | NAT10 | LLHSQLLEDGENLQPWDWRLLGRWHLGCAFQVQN | LLGRWHLGCAFQVQN | No | Junction | Junction | 15 | 2 | CTG | TGA | TransCirc | No |
chr11|34131380|34134420|+|4|circRNA|NAT10|NM_001144030|12,13,14,15 | circNAT10(12,13,14,15) | NAT10 | LNSLSRGKKASGDLIPWTVSEQRGHCMRFPSRSQSDTPLGMQWRSG | FPSRSQSDTPLGMQWR | No | Alternative | Junction | 16 | 1 | TTG | TGA | NA | No |
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