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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|16826119|16841722|-|2|circRNA|PLEKHA7|ENST00000531066.5|10,9 | circPLEKHA7(10,9) | PLEKHA7 | LSPRPTTQSPVTNVAGWDPDIREIVLIVAMMTLSTSRGRSRRESSTVPRGTHWRASGTGARPGLRTRQPRRMPCLWIYPLAQEASRHSPNGQRRMECCLPHMAQENRMGLVGTSGPFLPGPTLKNTAKGRAIWPRWSTGQGPRKGIAGGCAHGDASAHL | EIVLIVAMMTLSTSRGR | No | Alternative | Junction | 17 | 3 | CTG | TAA | TransCirc | No |
chr11|16841546|16855914|-|5|circRNA|PLEKHA7|ENST00000531066.5|9,8,7,6,5 | circPLEKHA7(9,8,7,6,5) | PLEKHA7 | LGQGHEPGCTGAVSIVTEEAESTYVEARQKPKTVQHGQ | LGQGHEPGCTGAVSIVTEEAESTYVEAR | No | Junction | Junction | 28 | 3 | TTG | TGA | TransCirc | No |
chr11|17131915|17145731|-|5|circRNA|PIK3C2A|ENST00000265970.11|11,10,9,8,7 | circPIK3C2A(11,10,9,8,7) | PIK3C2A | MERIFLNLFNQRRLALTRISSILLNGMNYTLLKNS | IFLNLFNQRR | No | Alternative | Junction | 10 | 3 | ATG | TAG | NA | No |
chr11|17131915|17145731|-|5|circRNA|PIK3C2A|ENST00000265970.11|11,10,9,8,7 | circPIK3C2A(11,10,9,8,7) | PIK3C2A | MERIFLNLFNQRRLALTRISSILLNGMNYTLLKNS | MERIFLNLFNQR | No | Alternative | Junction | 12 | 3 | ATG | TAG | NA | No |
chr11|17168676|17169806|-|1|circRNA|PIK3C2A|ENST00000533645.1|2 | circPIK3C2A(2) | PIK3C2A | LVFLVDMAQISSNSGFKECPSSHPEPTRAKDVDKEEALQMEAEALAKLQKDRQVTDNQRGFELSSSTRKKAQVYNKQDYDLMVFPESDSQKRALDIDVEKLTQAELEKLLLDDSFETKKTPVLPVTPILSPSFSAQLYFRPTIQRGQWPPGLPGPSTYALPSIYPSTYSKQAAFQNGFNPRMPTFPSTEPIYLSLPGQSPYFSYPLTPATPFHPQGSLPIYRPVVSTDMAKLFDKIASTSEFLKNGKARTDLEITDSKVSNLQVSPKSEDISKFDWLDLDPLSKPKVDNVEVLDHEEEKNVSSLLAKDPWDAVLLEERSTANCHLERKVNGKSLSVATVTRSQSLNIRTTQLAKAQGHISQALLFWKLQEKNRGRKVWSF | LVFLVDMAQISSNSGFK | No | Alternative | Junction | 17 | 3 | TTG | TAG | NA | No |
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