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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr11|12675408|12764434|+|2|circRNA|TEAD1|NM_021961|2,3 | circTEAD1(2,3) | TEAD1 | LQISQLTMMQKGSGAPTSSKAFRRPWLSIHHVGGGKSSYQTKAKCMDCCCRCRRRFIAHSSGKFSGVSRNIVSKKD | GSGAPTSSKAFR | No | Alternative | Junction | 12 | 2 | CTG | TGA | TransCirc | No |
chr11|128480190|128480451|-|1|circRNA|ETS1|ENST00000535549.5|2 | circETS1(2) | ETS1 | MTASTQRTIRLPCPTTSPRAPSRTMCGTVLTSIRTSLSFLLLP | APSRTMCGTVLTSIR | No | Alternative | Alternative | 15 | 1 | ATG | TAG | TransCirc | No |
chr11|128484822|128486146|-|2|circRNA|ETS1|NM_005238|5,4 | circETS1(5,4) | ETS1 | MVLSMPSVFHHRSSQSPASSQSPIRRSIPSARKSSSPSSMRMTTPRSFSETLSRQTPCRMTTLLSNKKSSPQTTCAWGGPVVRM | KSSPQTTCAWGGPVVR | No | Junction | Junction | 16 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr11|128484822|128486146|-|2|circRNA|ETS1|NM_005238|5,4 | circETS1(5,4) | ETS1 | MVLSMPSVFHHRSSQSPASSQSPIRRSIPSARKSSSPSSMRMTTPRSFSETLSRQTPCRMTTLLSNKKSSPQTTCAWGGPVVRM | MTTPRSFSETLSR | No | Alternative | Junction | 13 | 1 | ATG | TGA | riboCIRC,TransCirc | No |
chr11|12862314|12864684|+|1|ciRNA|TEAD1|NM_021961|4 | ciTEAD1(4) | TEAD1 | LCHSLGAWLLSQHKERWPPASTQRQRIVCLGDASGPRQVRESQKNKIRVKTSNSRSQMEG | IVCLGDASGPR | No | Alternative | Alternative | 11 | 3 | TTG | TGA | NA | No |
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