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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|98156092|98209899|+|4|circRNA|R3HCC1L|NM_001256619|2,3,4,5 | circR3HCC1L(2,3,4,5) | R3HCC1L | MWNSVTSVGMNLMGKHLKTKIWKAELKLIPRFWRYYMSFLEFLVLS | MWNSVTSVGMNLMGK | No | Alternative | Alternative | 15 | 1 | ATG | TGA | TransCirc | No |
chr10|99884010|99886632|-|3|circRNA|DNMBP|ENST00000543621.5|12,11,10 | circDNMBP(12,11,10) | DNMBP | MLQSEELRASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGEGEDRAACHLPLKSVTEHVYRAP | AACHLPLKSVTEHVYR | No | Alternative | Junction | 16 | 1 | ATG | TAA | TransCirc | No |
chr10|99884010|99886632|-|3|circRNA|DNMBP|ENST00000543621.5|12,11,10 | circDNMBP(12,11,10) | DNMBP | MLQSEELRASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGEGEDRAACHLPLKSVTEHVYRAP | SVTEHVYR | No | Alternative | Junction | 8 | 1 | ATG | TAA | TransCirc | No |
chr10|99884010|99886632|-|3|circRNA|DNMBP|ENST00000543621.5|12,11,10 | circDNMBP(12,11,10) | DNMBP | MLQSEELRASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGEGEDRAACHLPLKSVTEHVYRAP | SVTEHVYRAP | No | Alternative | Junction | 10 | 1 | ATG | TAA | TransCirc | No |
chr10|99884010|99886632|-|3|circRNA|DNMBP|ENST00000543621.5|12,11,10 | circDNMBP(12,11,10) | DNMBP | MLQSEELRASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGEGEDRAACHLPLKSVTEHVYRAP | WLIDNGEGEDRAACHLPLK | No | Junction | Junction | 19 | 1 | ATG | TAA | TransCirc | No |
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