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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|80504778|80507204|+|1|ciRNA|TSPAN14|ENST00000429989.7|3 | ciTSPAN14(3) | TSPAN14 | LGLLAQPQEERGGVETWLLLSGRTWCSCGSRKGMRLDMGRVGLCCCLLPCGRGAGEAVRAEKGQGGKRGGEGSSKVEQAWPERARNKASSSVLSLGLLPSVEPPFASSRRRQENLGLQAFLPWS | RQENLGLQAFLPWS | No | Alternative | Alternative | 14 | 1 | CTG | TAG | NA | No |
chr10|80504778|80507204|+|1|ciRNA|TSPAN14|ENST00000429989.7|3 | ciTSPAN14(3) | TSPAN14 | LQKKPGGCLGGTCSVGGGQEHFLGPEVGRDRLVGGAPKGMDGAGLWPGCQQEG | LVGGAPK | No | Alternative | Alternative | 7 | 2 | CTG | TGA | NA | No |
chr10|80504778|80507204|+|1|ciRNA|TSPAN14|ENST00000429989.7|3 | ciTSPAN14(3) | TSPAN14 | LRWAGIAWSEGPLRAWMGPDSGLAVNKRAEPGEASPCFQYHLHPPGQHP | WAGIAWSEGPLR | No | Alternative | Alternative | 12 | 1 | CTG | TGA | NA | No |
chr10|80504778|80507204|+|1|ciRNA|TSPAN14|ENST00000429989.7|3 | ciTSPAN14(3) | TSPAN14 | LWKPLSSRMRKSRQQGAGLGDMPPGCPVGQGWAFKHLWASLPSLRRRGEEWRPGSYCREGHGAVAAPGRG | EGHGAVAAPGRG | No | Alternative | Alternative | 12 | 2 | TTG | TGA | NA | No |
chr10|80570153|80609551|+|5|circRNA|SH2D4B|ENST00000339284.6|2,3,4,5,6 | circSH2D4B(2,3,4,5,6) | SH2D4B | MSSSAGLRRSSCLAELASRGTPSSSPPGSMQRVTSTSNGS | GTPSSSPPGSMQR | No | Junction | Junction | 13 | 3 | ATG | TAG | TransCirc | No |
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