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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|68786135|68786692|+|2|circRNA|CCAR1|ENST00000630771.2|19,20 | circCCAR1(19,20) | CCAR1 | MITINRDLLMAFVYFDQSHCGYLLEKDLEEILYTLGLHLSRAQIGMRKK | DLEEILYTLGLHLSRAQIGMR | No | Junction | Junction | 21 | 1 | ATG | TGA | TransCirc | No |
chr10|69198371|69203043|+|5|circRNA|SUPV3L1|NM_001301683|10,11,12,13,14 | circSUPV3L1(10,11,12,13,14) | SUPV3L1 | MFSAQLLSTRSSLLCVLHCYRFETIRGLPPFLCWTMH | MFSAQLLSTRSSLLCVLHCYR | No | Alternative | Junction | 21 | 2 | ATG | TAG | TransCirc | No |
chr10|69483763|69485160|+|1|new|ENST00000373290|ENST00000373290|1397|0 | NA | ENST00000373290 | LAGTAESLFLPSGSRDRFSWGLPVHVHVLTGGGGRGLGAGRSSPRDASLCACSWSRWCLPCTPHTPTAPLQVSL | LAGTAESLFLPSGSR | No | Alternative | Alternative | 15 | 1 | TTG | TGA | NA | No |
chr10|69483763|69485160|+|1|new|ENST00000373290|ENST00000373290|1397|0 | NA | ENST00000373290 | LPIKPGLAPLAQWQRGPALLMVVGEGRALPHRPPRQMEVTIWLGQLSHSSCPPAPETGFPGACLSTSTFSQEEGAEA | ALPHRPPR | No | Alternative | Alternative | 8 | 2 | CTG | TAG | NA | No |
chr10|70525922|70531454|+|4|circRNA|PALD1|NM_014431|2,3,4,5 | circPALD1(2,3,4,5) | PALD1 | LRADEDFVSYTPRDKQNLHENLQGLGPGVRVESLELAIRKEVWGPEAAGRLWVQRPAQPSRRSRQAPHLRAYRAVARWTVGTPSASTPSRALACITARPSPSSPTRWPLL | AVARWTVGTPSASTPSR | No | Alternative | Junction | 17 | 1 | CTG | TGA | TransCirc | No |
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