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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|43154896|43155810|+|1|circRNA|CSGALNACT2|NM_018590|2 | circCSGALNACT2(2) | CSGALNACT2 | LLGKYTLIRMPRRGLILHTRTHWLLLGLALLCSLVLFMYLLECAPQTDGNASLPGVVGENYGKEYYQALLQEQEEHYQTRATSLKRQIAQLKQELQEMSEKMRSLQERRNVGANGIGYQSNKEQAPSDLLEFLHSQIDKAEVSIGAKLPSEYGVIPFESFTLMKVFQLEMGLTRHPEEKPVRKDKRDELVEVIEAGLEVINNPDEDDEQEDEEGPLGEKLIFNENDFVEEKSLPI | YTLIRMPR | No | Alternative | Junction | 8 | 2 | TTG | TAA | TransCirc | No |
chr10|43176032|43183226|+|1|ciRNA|CSGALNACT2|NM_018590|7 | ciCSGALNACT2(7) | CSGALNACT2 | LGVTPPCQVSRATFLLNHPIPFEAEHLKFYIYPCALANNRQLFSKYTLHLRIGLYLLQT | LGVTPPCQVSR | No | Alternative | Junction | 11 | 3 | CTG | TAA | NA | No |
chr10|45459119|45461411|-|2|circRNA|MARCH8|ENST00000453424.6|7,6 | circ45359(7,6) | 44993 | LQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGSATVKEMMRAP | QGQATGSATVK | No | Junction | Junction | 11 | 1 | TTG | TGA | TransCirc | No |
chr10|45533109|45533289|-|1|circRNA|MARCH8|ENST00000453424.6|2 | circ45359(2) | 44993 | MTLPVETLFCEEDDQIRGWDEHATASDLCHSIPGCHLC | MTLPVETLFCEEDDQIRGWDEHATASDLCHSIPGCHLC | No | Alternative | Alternative | 38 | 3 | ATG | TAG | NA | No |
chr10|45728861|45773358|+|18|circRNA|FAM21C|ENST00000537517.5|3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20 | circFAM21C(3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20) | FAM21C | LKTMLIAEALCLALLPHLFLLQQSYYSFYRNSHSKLSLGPMKSRNKWTD | LSLGPMK | No | Alternative | Junction | 7 | 3 | TTG | TAA | TransCirc | No |
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