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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|26934412|26935627|-|2|circRNA|LINC00202-1|ENST00000458084.5|3,2 | circLINC00202-1(3,2) | LINC00202-1 | MPQAAHSVSAVLEKAQTHAETSKGEERKTFWCGLGSNSLEGETAPVWRGGHPWRDPF | TFWCGLGSNSLEGETAPVWR | No | Alternative | Junction | 20 | 3 | ATG | TAA | NA | No |
chr10|27043425|27061242|-|8|circRNA|ANKRD26|NM_001256053|20,19,18,17,16,15,14,13 | circANKRD26(20,19,18,17,16,15,14,13) | ANKRD26 | LKQPQRIVSYPTLVTRILCCSLNNLEWSVKMCFIYLLA | IVSYPTLVTR | No | Alternative | Junction | 10 | 2 | CTG | TGA | NA | No |
chr10|27136386|27142386|-|1|ciRNA|YME1L1|NM_014263|4 | ciYME1L1(4) | YME1L1 | LSVETPGLSIDAKERKKLAPQITLVLNYTFAKVFCSFSIVHVLYSKYIYFC | LSVETPGLSIDAK | No | Alternative | Alternative | 13 | 1 | CTG | TAG | NA | No |
chr10|27219722|27235212|-|4|circRNA|ACBD5|ENST00000396271.7|6,5,4,3 | circACBD5(6,5,4,3) | ACBD5 | LVMFSLLLQTPKPLMVKLKAVTVEPSLRKKRPKKK | AVTVEPSLR | No | Alternative | Alternative | 9 | 1 | TTG | TGA | NA | No |
chr10|27935009|27936880|-|2|circRNA|ARMC4|NM_001290021|9,8 | circARMC4(9,8) | ARMC4 | LVGLLTDQPEEVLVNVVGALGECCQERENRVIVRKCGGIQPLVNLLVGINQALLVNVTKAVGACAVEPESMIVLKIRKPGTSLGCTEDLSPWPVYSITLTIKSG | AVGACAVEPESMIVLK | No | Junction | Junction | 16 | 2 | TTG | TAG | NA | No |
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