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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|15816834|15837318|-|5|circRNA|FAM188A|ENST00000477891.1|9,8,7,6,5 | circFAM188A(9,8,7,6,5) | FAM188A | LKSPKFPIWIVGSETHLTVFFAKKKIVQKFTRIKRCCLGPVFNVGK | FPIWIVGSETHLTVFFAKK | No | Junction | Junction | 19 | 1 | TTG | TAA | TransCirc | No |
chr10|17856241|17863682|+|3|circRNA|MRC1|NM_002438|9,10,11 | circMRC1(9,10,11) | MRC1 | LDRTFRYTNQRDFSVDHRGRGSVHPLEFRYARMGTGQIGAVSGLLATSAR | MGTGQIGAVSGLLATSAR | No | Alternative | Junction | 18 | 1 | CTG | TGA | TransCirc | No |
chr10|19066718|19088185|+|3|circRNA|MALRD1|ENST00000454679.6|2,3,4 | circMALRD1(2,3,4) | MALRD1 | LGFKLHVEVLFSIYGKTQLHSQISGREMSSKSRVHRDFRFEL | EMSSKSR | No | Alternative | Junction | 7 | 2 | TTG | TGA | TransCirc | No |
chr10|21617111|21670704|+|3|circRNA|MLLT10|ENST00000631589.1|8,9,10 | circMLLT10(8,9,10) | MLLT10 | LKRLEDTTARFTNANFQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQRGRKPGGGRNPGTTVSAASPFPQEKEQTGI | KPGGGRNPGTTVSAASPFPQEK | No | Junction | Junction | 22 | 1 | TTG | TAA | TransCirc | No |
chr10|21617111|21670704|+|3|circRNA|MLLT10|ENST00000631589.1|8,9,10 | circMLLT10(8,9,10) | MLLT10 | LKRLEDTTARFTNANFQEVSAHTSSGKDVSETRGSEGKGKKSSAHSSGQRGRKPGGGRNPGTTVSAASPFPQEKEQTGI | NPGTTVSAASPFPQEK | No | Junction | Junction | 16 | 1 | TTG | TAA | TransCirc | No |
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