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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr10|11942664|12004727|-|14|circRNA|UPF2|ENST00000356352.6|17,16,15,14,13,12,11,10,9,8,7,6,5,4 | circUPF2(17,16,15,14,13,12,11,10,9,8,7,6,5,4) | UPF2 | MIKGGGLKHVPCVEDEDFIQALDKMMLENLQNMGLELIYSHLVNLENMTWKVVYGKMKMLGIFMRTSLI | MLGIFMRTSLI | No | Alternative | Junction | 11 | 1 | ATG | TGA | NA | No |
chr10|119515508|119527424|-|3|circRNA|RGS10|NM_002925|4,3,2 | circRGS10(4,3,2) | RGS10 | MQEKAKEIYMTFLSSKASSQVNVEGQSRLNEKILEEPHPLMFQKLQDQTSTTAMAVPAAATRASRAQPNGRHPWRICWKTQKA | ILEEPHPLMFQKLQDQTSTTAMAVPAAATR | No | Junction | Junction | 30 | 1 | ATG | TGA | TransCirc | No |
chr10|11955231|11956523|-|2|circRNA|UPF2|ENST00000356352.6|13,12 | circUPF2(13,12) | UPF2 | LFPCIFSGFETDAKAALAGPRSERLCYLLYDKHLECEI | LFPCIFSGFETDAKAALAGPR | No | Junction | Junction | 21 | 3 | TTG | TAA | TransCirc | No |
chr10|11979056|12004727|-|5|circRNA|UPF2|ENST00000356352.6|8,7,6,5,4 | circUPF2(8,7,6,5,4) | UPF2 | LDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHNMGLELIYSHLVNLENMTWKVVYGKMKMLGIFMRTSLI | GDFRFHNMGLELIYSHLVNLENMTWK | No | Junction | Junction | 26 | 2 | TTG | TGA | TransCirc | No |
chr10|119796714|119811955|+|9|circRNA|INPP5F|NM_014937|7,8,9,10,11,12,13,14,15 | circINPP5F(7,8,9,10,11,12,13,14,15) | INPP5F | LMMRSSMGAGPSLTVTLDSRCGLLDYPHDPRFCAD | LMMRSSMGAGPSLTVTLDSR | No | Junction | Junction | 20 | 1 | CTG | TGA | TransCirc | No |
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