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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|9244924|9247083|+|2|circRNA|H6PD|ENST00000377403.6|2,3 | circH6PD(2,3) | H6PD | LPQGHGTQSLCRAQGSVPAAEPVPPTEDGRGLSGPEQGHRGTAPARRPPGGWQDLLLLSATLRL | GLSGPEQGHR | No | Alternative | Alternative | 10 | 2 | CTG | TGA | TransCirc | No |
chr1|93183359|93207398|+|8|circRNA|CCDC18|ENST00000343253.11|2,3,4,5,6,7,8,9 | circCCDC18(2,3,4,5,6,7,8,9) | CCDC18 | MAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPKWNLVHQTTIIKTMKRKVCLQMLLP | WNLVHQTTIIK | No | Alternative | Junction | 11 | 2 | ATG | TAA | TransCirc | No |
chr1|93183359|93207398|+|8|circRNA|CCDC18|ENST00000343253.11|2,3,4,5,6,7,8,9 | circCCDC18(2,3,4,5,6,7,8,9) | CCDC18 | MAVKNSEVMAQLTESRQSILKLESELENKDEILRDKFSLMNENRELKVRVAAQNERLDLCQQEIESSRVELRSLEKIISQLPKWNLVHQTTIIKTMKRKVCLQMLLP | WNLVHQTTIIKTMK | No | Alternative | Junction | 14 | 2 | ATG | TAA | TransCirc | No |
chr1|93183359|93216746|+|12|circRNA|CCDC18|ENST00000343253.11|2,3,4,5,6,7,8,9,10,11,12,13 | circCCDC18(2,3,4,5,6,7,8,9,10,11,12,13) | CCDC18 | MTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMKWNLVHQTTIIKTMKRKVCLQMLLP | IVAYSSIAAKNAELEQELMK | No | Junction | Junction | 20 | 1 | ATG | TAA | TransCirc | No |
chr1|93183359|93216746|+|12|circRNA|CCDC18|ENST00000343253.11|2,3,4,5,6,7,8,9,10,11,12,13 | circCCDC18(2,3,4,5,6,7,8,9,10,11,12,13) | CCDC18 | MTKKCSQLLTLEKQLEEKIVAYSSIAAKNAELEQELMKWNLVHQTTIIKTMKRKVCLQMLLP | NAELEQELMKWNLVHQTTIIK | No | Junction | Junction | 21 | 1 | ATG | TAA | TransCirc | No |
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