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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|70296129|70306290|-|3|circRNA|ANKRD13C|NM_030816|8,7,6 | circANKRD13C(8,7,6) | ANKRD13C | LQLYQQNQFLSRVPRQDGFFGKIKHAFTFPNSAFRCM | HAFTFPNSAFR | No | Junction | Junction | 11 | 2 | CTG | TAA | riboCIRC,TransCirc | No |
chr1|70296129|70306290|-|3|circRNA|ANKRD13C|NM_030816|8,7,6 | circANKRD13C(8,7,6) | ANKRD13C | LQLYQQNQFLSRVPRQDGFFGKIKHAFTFPNSAFRCM | IKHAFTFPNSAFR | No | Junction | Junction | 13 | 2 | CTG | TAA | riboCIRC,TransCirc | No |
chr1|70417936|70424416|+|3|circRNA|CTH|NM_001902|3,4,5 | circCTH(3,4,5) | CTH | LTLKAVHILSISMETLFWSWITLLCHHISRFGLCFRFSSHCNYYPSFKSRRPNYLYG | AVHILSISMETLFWSWITLLCHHISRFGLCFR | No | Junction | Junction | 32 | 2 | TTG | TGA | NA | No |
chr1|75238512|75243011|-|3|circRNA|SLC44A5|NM_001130058|10,9,8 | circSLC44A5(10,9,8) | SLC44A5 | LLQNLCLQVPRKIFNLCGNATFVHKRQKLLGRLPSVL | KIFNLCGNATFVHK | No | Alternative | Junction | 14 | 1 | TTG | TAA | TransCirc | No |
chr1|77717866|77728712|-|8|circRNA|USP33|ENST00000370794.7|17,16,15,14,13,12,11,10 | circUSP33(17,16,15,14,13,12,11,10) | USP33 | LCIHLKRFRHELMFSTKISTHVSFPLEGLDLQPFLAKDSPAQIVTYDLLSVICHHGTASRCSRIPSMFNGFAS | DSPAQIVTYDLLSVICHHGTASR | No | Junction | Junction | 23 | 1 | TTG | TGA | riboCIRC,TransCirc | No |
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