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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|5947103|5952836|-|3|circRNA|NPHP4|NM_001291594|7,6,5 | circNPHP4(7,6,5) | NPHP4 | LHLRSSSSWSTCSAALQEWTAMRRSPKASPPEAHHGALG | ASPPEAHHGALG | No | Alternative | Junction | 12 | 3 | CTG | TGA | TransCirc | No |
chr1|5947103|5952836|-|3|circRNA|NPHP4|NM_001291594|7,6,5 | circNPHP4(7,6,5) | NPHP4 | LHLRSSSSWSTCSAALQEWTAMRRSPKASPPEAHHGALG | LHLRSSSSWSTCSAALQEWTAMR | No | Junction | Junction | 23 | 3 | CTG | TGA | TransCirc | No |
chr1|59821857|59843598|+|8|circRNA|HOOK1|ENST00000371208.3|2,3,4,5,6,7,8,9 | circHOOK1(2,3,4,5,6,7,8,9) | HOOK1 | LVSENEMMNEKLDQLDGSFDDPNTVVAKKYFHAQLQLEQLQEENFSCRHSILPHLVKMSNS | HSILPHLVKMSNS | No | Alternative | Junction | 13 | 1 | CTG | TGA | TransCirc | No |
chr1|59821857|59843598|+|8|circRNA|HOOK1|ENST00000371208.3|2,3,4,5,6,7,8,9 | circHOOK1(2,3,4,5,6,7,8,9) | HOOK1 | LVSENEMMNEKLDQLDGSFDDPNTVVAKKYFHAQLQLEQLQEENFSCRHSILPHLVKMSNS | YFHAQLQLEQLQEENFSCRHSILPHLVK | No | Junction | Junction | 28 | 1 | CTG | TGA | TransCirc | No |
chr1|61775205|61801769|+|6|circRNA|INADL|ENST00000316485.10|7,8,9,10,11,12 | circINADL(7,8,9,10,11,12) | INADL | LKPPALFLTGAVETETNVDGEDEEIKERIDTLKNDNIQALEKLGLLGPC | LGLLGPC | No | Alternative | Junction | 7 | 3 | CTG | TGA | TransCirc | No |
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