top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|43598053|43598698|+|1|ciRNA|PTPRF|ENST00000359947.8|12 | ciPTPRF(12) | PTPRF | LTRGGQRPGAPPPPVPPCRPSPPSERPGPEGWAGPVLGSYPWRAEGAFRVPHQGQMI | AEGAFRVPHQGQMI | No | Alternative | Alternative | 14 | 1 | CTG | TAA | NA | No |
chr1|43617444|43620579|+|8|circRNA|PTPRF|ENST00000359947.8|24,25,26,27,28,29,30,31 | circPTPRF(24,25,26,27,28,29,30,31) | PTPRF | LLATSTLLLTRWLSTTCPSISCVSSRSRMPGPSTLDSSSRGRIQTWR | SRMPGPSTLDSSSR | No | Junction | Junction | 14 | 2 | CTG | TGA | TransCirc | No |
chr1|43653136|43671875|+|10|circRNA|KDM4A|NM_014663|2,3,4,5,6,7,8,9,10,11 | circKDM4A(2,3,4,5,6,7,8,9,10,11) | KDM4A | LSSQAPKRNHLLAWALALHGILSLLIQKLVSLSPAEPKGKREFSLCTVMPKGMAGSLWESHARGRKEAPLEVSVSGSWQRFLSD | LVSLSPAEPK | No | Alternative | Junction | 10 | 1 | TTG | TAA | TransCirc | No |
chr1|43653136|43689095|+|12|circRNA|KDM4A|NM_014663|2,3,4,5,6,7,8,9,10,11,12,13 | circKDM4A(2,3,4,5,6,7,8,9,10,11,12,13) | KDM4A | LTPEEEAEETEAWAKPLSQLWQNRPPNFEAEKEFNETMAQQAPHCAVCMIFQTYHQIPV | EFNETMAQQAPHCAVCMIFQTYHQIPV | No | Junction | Junction | 27 | 3 | CTG | TGA | TransCirc | No |
chr1|43692311|43693971|+|1|ciRNA|KDM4A|NM_014663|16 | ciKDM4A(16) | KDM4A | LGRGRERAVITGRLGHSRGRFQEALGSYGKEVCIELSSLFSLPETCHTPLACSSVHFSTEWCKKHDPVLT | GRFQEALGSYGK | No | Alternative | Alternative | 12 | 2 | TTG | TAG | NA | No |
Page 1 of 1
bottom of page