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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|41113282|41143112|-|3|circRNA|SCMH1|NM_001031694|8,7,6 | circSCMH1(8,7,6) | SCMH1 | LVPLRLPRHLPCGLVFLDWRQPAASWHQSPTHLQATSSRSV | LPRHLPCGLVFLDWR | No | Alternative | Junction | 15 | 3 | CTG | TGA | TransCirc | No |
chr1|41113282|41143112|-|3|circRNA|SCMH1|NM_001031694|8,7,6 | circSCMH1(8,7,6) | SCMH1 | LVPLRLPRHLPCGLVFLDWRQPAASWHQSPTHLQATSSRSV | QPAASWHQSPTHLQATSSRSV | No | Junction | Junction | 21 | 3 | CTG | TGA | TransCirc | No |
chr1|41116921|41143112|-|2|circRNA|SCMH1|NM_001031694|7,6 | circSCMH1(7,6) | SCMH1 | LAHVPFEDAKWSRDGSHQDFPQVLHTSKQRVQDQYEIGSTGPQEHHIHLYCHSSWTDRCPPSPAP | WSRDGSHQDFPQVLHTSK | No | Junction | Junction | 18 | 2 | TTG | TGA | TransCirc | No |
chr1|41142877|41143112|-|1|circRNA|SCMH1|NM_001172222|2 | circSCMH1(2) | SCMH1 | MKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLVLHTSKQRVQDQYEIGSTGPQEHHIHLYCHSSWTDRCPPSPAP | LVDSAEIQPIGNCEKNGGMLQPPLVLHTSK | No | Junction | Junction | 30 | 1 | ATG | TGA | TransCirc | No |
chr1|41142877|41143112|-|1|circRNA|SCMH1|NM_001172222|2 | circSCMH1(2) | SCMH1 | MKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLVLHTSKQRVQDQYEIGSTGPQEHHIHLYCHSSWTDRCPPSPAP | NGGMLQPPLVLHTSK | No | Junction | Junction | 15 | 1 | ATG | TGA | TransCirc | No |
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