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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|39368147|39372596|+|3|circRNA|MACF1|ENST00000567887.5|50,51,52 | circMACF1(50,51,52) | MACF1 | LVEEINCKGTSLENLIMEITAPDSQGKTGAQFGNGRPTGEPRYS | GTSLENLIMEITAPDSQGKTGAQFGNGRPTGEPR | No | Junction | Junction | 34 | 1 | CTG | TGA | TransCirc | No |
chr1|39447431|39448763|+|4|circRNA|MACF1|ENST00000567887.5|81,82,83,84 | circMACF1(81,82,83,84) | MACF1 | LKEKTLLPEDSQKLDNFLGEVRDKWDTVCGKSVERQSWKRPSTWQQNSRIPYKNLSTGSL | IPYKNLSTGSL | No | Alternative | Junction | 11 | 1 | CTG | TAG | TransCirc | No |
chr1|39463686|39465050|+|1|ciRNA|MACF1|ENST00000567887.5|94 | ciMACF1(94) | MACF1 | MIGKEDLDCTKKHRKVHVSLVYPKCPQSTPNLPHAAVS | CPQSTPNLPHAAVS | No | Alternative | Alternative | 14 | 1 | ATG | TGA | NA | No |
chr1|39853969|39876132|-|3|circRNA|TRIT1|ENST00000486825.6|4,3,2 | circTRIT1(4,3,2) | TRIT1 | LKIYLPETKFLLLWEEPIITLNLCSGKFLSIPSFGFLRNLNQTRTLLAS | FLSIPSFGFLRNLNQTR | No | Junction | Junction | 17 | 2 | TTG | TGA | NA | No |
chr1|40189054|40195764|+|3|circRNA|RLF|NM_012421|2,3,4 | circRLF(2,3,4) | RLF | LEFGNNNLQILVHVTKEGVWKNPVLLKILSQQPVETEEDLIAICKQQECIRTYCVSSGGISTCHPKLCQCTSILNY | ILSQQPVETEEDLIAICKQQECIR | No | Junction | Junction | 24 | 1 | TTG | TGA | TransCirc | No |
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