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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|3631465|3633503|-|3|circRNA|WRAP73|ENST00000270708.11|11,10,9 | circWRAP73(11,10,9) | WRAP73 | LRLFAVLEQLSPVRAFQWDPQQPRLAICTGGSRLYLWSPAGCMSVQVPGEGGV | LYLWSPAGCMSVQVPGEGGV | No | Junction | Junction | 20 | 3 | CTG | TAA | TransCirc | No |
chr1|37495935|37501803|-|1|ciRNA|MEAF6|NM_001270875|5 | ciMEAF6(5) | MEAF6 | LALGTHLPQERRVKLICFLSREAKFSVPEWHTSGQLRLLDSCHL | LICFLSR | No | Alternative | Alternative | 7 | 1 | TTG | TAG | NA | No |
chr1|37495935|37501803|-|1|ciRNA|MEAF6|NM_001270875|5 | ciMEAF6(5) | MEAF6 | LYIRSTPPGRLRAEQVKGGNARDGWHSLFSSLLLDLVYKSVGYSFMHPRY | SVGYSFMHPR | No | Alternative | Alternative | 10 | 1 | CTG | TAA | NA | No |
chr1|37723040|37727210|-|3|circRNA|EPHA10|ENST00000432874.7|4,3,2 | circEPHA10(4,3,2) | EPHA10 | LCICSPRNWMRKASRWRGALEELPQGPGTRAPPLSSP | GALEELPQGPGTR | No | Junction | Junction | 13 | 1 | CTG | TAG | TransCirc | No |
chr1|3785086|3787310|-|2|circRNA|LRRC47|ENST00000378251.2|3,2 | circLRRC47(3,2) | LRRC47 | LRPAPTGPQDVGPLEQPAERDPCRACGLPQAQGDQFPWEQAEGQAPGEDGQRLPDQIHPGVPARRRPWWREGQGPCRGLGEGREPEEEEGEEAEAGRW | ACGLPQAQGDQFPWEQAEGQAPGEDGQR | No | Alternative | Junction | 28 | 3 | CTG | TGA | TransCirc | No |
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