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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|28529857|28532350|+|3|circRNA|RCC1|ENST00000398958.6|4,5,6 | circRCC1(4,5,6) | RCC1 | MMRVPWEGTHQWRARRWSLGKWSCKRRWYRCQQETVTQQPSPMMAVSSSGAPSGTGRCHPSA | CQQETVTQQPSPMMAVSSSGAPSGTGR | No | Junction | Junction | 27 | 2 | ATG | TAG | TransCirc | No |
chr1|28529857|28532350|+|3|circRNA|RCC1|ENST00000398958.6|4,5,6 | circRCC1(4,5,6) | RCC1 | MMRVPWEGTHQWRARRWSLGKWSCKRRWYRCQQETVTQQPSPMMAVSSSGAPSGTGRCHPSA | CQQETVTQQPSPMMAVSSSGAPSGTGRCHPSA | No | Junction | Junction | 32 | 2 | ATG | TAG | TransCirc | No |
chr1|28579981|28580559|-|1|ciRNA|SNHG12|ENST00000464612.5|1 | ciSNHG12(1) | SNHG12 | LGAAWWDRTACFQGLWLVIAMGSPTACKSNLERL | LGAAWWDRTACFQGLWLVIAMGSPTACK | No | Alternative | Alternative | 28 | 1 | CTG | TGA | NA | No |
chr1|28683582|28704329|+|7|circRNA|GMEB1|NM_006582|2,3,4,5,6,7,8 | circGMEB1(2,3,4,5,6,7,8) | GMEB1 | LQYTEGNRGATQGSSAAAHPGSLPSHSSPSYLTSCERWLMQK | LQYTEGNR | No | Alternative | Junction | 8 | 2 | CTG | TGA | TransCirc | No |
chr1|28683585|28697084|+|5|circRNA|GMEB1|NM_024482|2,3,4,5,6 | circGMEB1(2,3,4,5,6).A | GMEB1 | MMDSGQIDFYQHDKVCSNTCRSTKFDLLISSARAPVPGQQTSVVQTPTSADVPAI | APVPGQQTSVVQTPTSADVPAI | No | Junction | Junction | 22 | 2 | ATG | TGA | TransCirc | No |
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