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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|236806143|236891329|+|26|circRNA|MTR|ENST00000535889.5|3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28 | circMTR(3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28) | MTR | LASTEYPRRHSPVRRGCCAPGCRAHSHLLWVKATGILAGWGRYH | ATGILAGWGR | No | Junction | Junction | 10 | 2 | CTG | TGA | TransCirc | No |
chr1|236831965|236874846|+|11|circRNA|MTR|ENST00000535889.5|13,14,15,16,17,18,19,20,21,22,23 | circMTR(13,14,15,16,17,18,19,20,21,22,23) | MTR | LSGLITPSLDEMIFVAKEMERLAIRIPLLIGGATTSKSRALQDWTVHQLC | IPLLIGGATTSKSR | No | Junction | Junction | 14 | 3 | CTG | TAA | TransCirc | No |
chr1|23750844|23752518|+|2|circRNA|TCEB3|ENST00000418390.6|4,5 | circTCEB3(4,5) | TCEB3 | LPVLPDLPLPAIQANYRPLPSLELISSFQPKRKEMLSLMNRTLRRAIPESALGMPCRRRRRWRGTTKKPGKPRGADPIALTTGRRNIGNSRSSRDLTKCLTVMRGEMRERGVTECHQLTLQTLSLLIMAMFNPLHLVPVLIRCTSTTTDPWRRTRSPLFHTRSLGKATAMPFRTDSGPAKNDTWVNPMGKGL | ATAMPFRTDSGPAK | No | Alternative | Junction | 14 | 1 | TTG | TGA | TransCirc | No |
chr1|23750844|23752518|+|2|circRNA|TCEB3|ENST00000418390.6|4,5 | circTCEB3(4,5) | TCEB3 | LPVLPDLPLPAIQANYRPLPSLELISSFQPKRKEMLSLMNRTLRRAIPESALGMPCRRRRRWRGTTKKPGKPRGADPIALTTGRRNIGNSRSSRDLTKCLTVMRGEMRERGVTECHQLTLQTLSLLIMAMFNPLHLVPVLIRCTSTTTDPWRRTRSPLFHTRSLGKATAMPFRTDSGPAKNDTWVNPMGKGL | EMLSLMNRTLR | No | Alternative | Junction | 11 | 1 | TTG | TGA | TransCirc | No |
chr1|23750844|23752518|+|2|circRNA|TCEB3|ENST00000418390.6|4,5 | circTCEB3(4,5) | TCEB3 | LPVLPDLPLPAIQANYRPLPSLELISSFQPKRKEMLSLMNRTLRRAIPESALGMPCRRRRRWRGTTKKPGKPRGADPIALTTGRRNIGNSRSSRDLTKCLTVMRGEMRERGVTECHQLTLQTLSLLIMAMFNPLHLVPVLIRCTSTTTDPWRRTRSPLFHTRSLGKATAMPFRTDSGPAKNDTWVNPMGKGL | GADPIALTTGR | No | Alternative | Junction | 11 | 1 | TTG | TGA | TransCirc | No |
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