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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|229458160|229460769|-|2|circRNA|NUP133|ENST00000261396.5|21,20 | circNUP133(21,20) | NUP133 | LGLANMETRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEFFRLSLPLVSGERKARQIIISAHFSAWTVGKFFASS | IEEFFRLSLPLVSGER | No | Junction | Junction | 16 | 1 | CTG | TGA | TransCirc | No |
chr1|229458160|229460769|-|2|circRNA|NUP133|ENST00000261396.5|21,20 | circNUP133(21,20) | NUP133 | LGLANMETRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEFFRLSLPLVSGERKARQIIISAHFSAWTVGKFFASS | LAALASDFSEDMLQEKIEEFFR | No | Junction | Junction | 22 | 1 | CTG | TGA | TransCirc | No |
chr1|229458160|229460769|-|2|circRNA|NUP133|ENST00000261396.5|21,20 | circNUP133(21,20) | NUP133 | LGLANMETRYFAKKKTLLGLSKLAALASDFSEDMLQEKIEEFFRLSLPLVSGERKARQIIISAHFSAWTVGKFFASS | QIIISAHFSAWTVGKFFASS | No | Alternative | Junction | 20 | 1 | CTG | TGA | TransCirc | No |
chr1|229460610|229475732|-|7|circRNA|NUP133|ENST00000261396.5|20,19,18,17,16,15,14 | circNUP133(20,19,18,17,16,15,14) | NUP133 | LEKGKRGKLLSQPISQHGQLANFLQAHEHLSWLHEINSQELEKKHLGSAIRH | HLGSAIR | No | Alternative | Junction | 7 | 1 | CTG | TGA | TransCirc | No |
chr1|229530198|229531731|-|2|circRNA|ABCB10|ENST00000344517.4|8,7 | circABCB10(8,7) | ABCB10 | MRKASRVLWSLRTCILPIQLAQRCPYFRISAFPFRQDLSRHWLAQVVLANQQCFHSC | ISAFPFR | No | Alternative | Alternative | 7 | 1 | ATG | TGA | NA | No |
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