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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|214464629|214464957|-|1|circRNA|PTPN14|ENST00000366956.9|2 | circPTPN14(2) | PTPN14 | LLCHTDSPAGQQCYRVHAVGGKHRARMPGGCGPEAGAARAIFQRATLGMDTLFPAWRSTGDSVIFQSRNC | MPGGCGPEAGAAR | No | Alternative | Junction | 13 | 1 | CTG | TAA | TransCirc | No |
chr1|215575900|215586685|+|6|circRNA|KCTD3|ENST00000259154.8|4,5,6,7,8,9 | circKCTD3(4,5,6,7,8,9) | KCTD3 | LDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEIDIY | MVAVASESSIILWSVQDGGSGSEIDIY | No | Junction | Junction | 27 | 2 | TTG | TGA | TransCirc | No |
chr1|21701497|21703618|-|2|circRNA|USP48|ENST00000400301.5|22,21 | circUSP48(22,21) | USP48 | LKQRRTRKKLNQMEKKIQILIKTLSRMQRRLIVSAAEGPA | LIVSAAEGPA | No | Alternative | Junction | 10 | 2 | CTG | TGA | TransCirc | No |
chr1|21706743|21724095|-|5|circRNA|USP48|ENST00000400301.5|16,15,14,13,12 | circUSP48(16,15,14,13,12) | USP48 | LQQYFPKAPEFPSYKECCSQCKSPMSLSLWNGCKSGWMNQHLPNLLIITLACVPMTSFTRIKYQL | ECCSQCKSPMSLSLWNGCK | No | Junction | Junction | 19 | 3 | CTG | TGA | TransCirc | No |
chr1|21838824|21840017|-|3|circRNA|HSPG2|NM_001291860|74,73,72 | circHSPG2(74,73,72) | HSPG2 | LPGHQQGGLSRGLCPAARPRFHQLNHQMRALMCALLRMH | ALMCALLRMH | No | Alternative | Junction | 10 | 2 | CTG | TAG | TransCirc | No |
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