top of page
Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|211356366|211361162|+|2|circRNA|TRAF5|ENST00000462410.5|4,5 | circTRAF5(4,5) | TRAF5 | MYIAAMLLDVMPRLFWAGTRLVLLMNDICFCHFSRNVC | MYIAAMLLDVMPR | No | Alternative | Alternative | 13 | 2 | ATG | TGA | NA | No |
chr1|211778917|211783502|-|2|circRNA|LPGAT1|ENST00000366997.8|6,5 | circLPGAT1(6,5) | LPGAT1 | LFCFQKGASSGRGEKQVRHLPRKITCHFLQMLLCQGLGQQKLF | GASSGRGEK | No | Alternative | Alternative | 9 | 3 | TTG | TGA | NA | No |
chr1|212329134|212342280|+|3|circRNA|PPP2R5A|ENST00000261461.6|2,3,4 | circPPP2R5A(2,3,4) | PPP2R5A | LVYEFFLRFLESPDFQPSIAKRYIDQKFVQQMPLQMNNKSFSVRSCSSVVYCLISWTLFQT | FVQQMPLQMNNK | No | Junction | Junction | 12 | 1 | TTG | TGA | TransCirc | No |
chr1|21247220|21256138|-|2|circRNA|ECE1|NM_001113347|7,6 | circECE1(7,6) | ECE1 | MNPSLLWSMTRNTLSRSPLSSTPPTDGADRISELHGPAGEAAGRRGRGGHPAPDAADLGL | MNPSLLWSMTRNTLSR | No | Alternative | Junction | 16 | 2 | ATG | TGA | TransCirc | No |
chr1|21247220|21256138|-|2|circRNA|ECE1|NM_001113347|7,6 | circECE1(7,6) | ECE1 | MNPSLLWSMTRNTLSRSPLSSTPPTDGADRISELHGPAGEAAGRRGRGGHPAPDAADLGL | SPLSSTPPTDGADRISELHGPAGEAAGR | No | Junction | Junction | 28 | 2 | ATG | TGA | TransCirc | No |
Page 1 of 1
bottom of page