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Short-Read CircRNA Encoded Peptides
Use criteria below to search among 5,854 circRNA peptides detected by short-read sequencing:
*Click CircRNA to view comprehensive information in new page.
*Short-read circRNA IDs are unique identifiers assigned to each circRNA in the format of "chromosome|start position|end position|strand|number of exons|type of circRNA|gene name|transcript ID|exon indices"
*CircRNA UID (universal identifiers) are named according to nomenclature standards (PMID: 36658223)
CircRNA | CircRNA UID | Gene | ORF | Peptide | ORF Found in Long-Read | Peptide Type | ORF Type | Peptide Length | Frame | Start Codon | Stop Codon | Ribo-Seq Peptide Support | Neoantigen Support |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
chr1|206914114|206921817|-|1|ciRNA|FCMR|NM_001193338|1 | ciFCMR(1) | FCMR | LLLFELTRSSSALPPGKSPLSGCQSPSPELPSHQGPMDLDLILYGENFFPFSNHVFTSVYILRVIL | LLLFELTR | No | Alternative | Alternative | 8 | 2 | CTG | TAA | NA | No |
chr1|206914114|206921817|-|1|ciRNA|FCMR|NM_001193338|1 | ciFCMR(1) | FCMR | LTKLDSALLKVCPVDKSQYVCKCLSAHGHAMFSLISRTVRGLFWLFGRISSPHFRLPAPPRHTHTTLPYELSSQKYADTYGIRLVGN | GLFWLFGR | No | Alternative | Alternative | 8 | 1 | TTG | TAG | NA | No |
chr1|206914114|206921817|-|1|ciRNA|FCMR|NM_001193338|1 | ciFCMR(1) | FCMR | LTKLDSALLKVCPVDKSQYVCKCLSAHGHAMFSLISRTVRGLFWLFGRISSPHFRLPAPPRHTHTTLPYELSSQKYADTYGIRLVGN | ISSPHFR | No | Alternative | Alternative | 7 | 1 | TTG | TAG | NA | No |
chr1|20747543|20749882|-|2|circRNA|HP1BP3|ENST00000312239.9|11,10 | circHP1BP3(11,10) | HP1BP3 | MGGWNRSLGKGSVAPSSSVFPIIPAEEIRGETPAWWKPDGICNLVCHCCHE | GSVAPSSSVFPIIPAEEIR | No | Junction | Junction | 19 | 1 | ATG | TGA | TransCirc | No |
chr1|20765376|20773610|-|4|circRNA|HP1BP3|ENST00000312239.9|8,7,6,5 | circHP1BP3(8,7,6,5) | HP1BP3 | MSSHWPLLAFVNLKKLPTVSSGNMCLSIILSLEWTSVRKISLKKRRRK | LPTVSSGNMCLSIILSLEWTSVRK | No | Junction | Junction | 24 | 2 | ATG | TGA | TransCirc | No |
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